Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC12.38□□□□□ -0.43
LMO4P61968 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC12.38□□□□□ -0.43
LMO4P61968 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC12.38□□□□□ -0.43
LMO4P61968 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC12.38□□□□□ -0.43
LMO4P61968 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC12.38□□□□□ -0.43
LMO4P61968 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC12.38□□□□□ -0.43
LMO4P61968 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
LMO4P61968 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 SDCCAG3P2-201ENST00000326105 1023 ntBASIC12.38□□□□□ -0.43
LMO4P61968 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 AK6-201ENST00000380818 1183 ntTSL 2 BASIC12.38□□□□□ -0.43
LMO4P61968 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC12.38□□□□□ -0.43
LMO4P61968 KRTAP19-9P-201ENST00000421795 191 ntBASIC12.38□□□□□ -0.43
LMO4P61968 TLE1P1-201ENST00000422965 589 ntBASIC12.38□□□□□ -0.43
LMO4P61968 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC12.38□□□□□ -0.43
LMO4P61968 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC12.38□□□□□ -0.43
LMO4P61968 HNRNPA1P36-201ENST00000521313 955 ntBASIC12.38□□□□□ -0.43
LMO4P61968 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC12.38□□□□□ -0.43
LMO4P61968 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC12.38□□□□□ -0.43
LMO4P61968 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC12.38□□□□□ -0.43
LMO4P61968 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC12.38□□□□□ -0.43
LMO4P61968 AC100827.2-201ENST00000563214 1194 ntBASIC12.38□□□□□ -0.43
LMO4P61968 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC12.38□□□□□ -0.43
LMO4P61968 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC12.38□□□□□ -0.43
LMO4P61968 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 AC005324.6-201ENST00000587972 613 ntBASIC12.38□□□□□ -0.43
LMO4P61968 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC12.38□□□□□ -0.43
LMO4P61968 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
LMO4P61968 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC12.38□□□□□ -0.43
LMO4P61968 AC004923.1-202ENST00000642106 209 ntBASIC12.38□□□□□ -0.43
LMO4P61968 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
LMO4P61968 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
LMO4P61968 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC12.38□□□□□ -0.43
LMO4P61968 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
LMO4P61968 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 AC003102.2-201ENST00000589195 1469 ntBASIC12.38□□□□□ -0.43
LMO4P61968 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 AC007950.2-201ENST00000615045 2347 ntBASIC12.38□□□□□ -0.43
LMO4P61968 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
LMO4P61968 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC12.37□□□□□ -0.43
LMO4P61968 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
LMO4P61968 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 E2F3P2-201ENST00000447755 1422 ntBASIC12.37□□□□□ -0.43
LMO4P61968 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC12.37□□□□□ -0.43
LMO4P61968 AC004899.1-201ENST00000424687 1714 ntBASIC12.37□□□□□ -0.43
LMO4P61968 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC12.37□□□□□ -0.43
LMO4P61968 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 AC023090.2-201ENST00000625182 2110 ntBASIC12.37□□□□□ -0.43
LMO4P61968 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
LMO4P61968 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC12.37□□□□□ -0.43
LMO4P61968 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
LMO4P61968 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
LMO4P61968 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC12.37□□□□□ -0.43
LMO4P61968 AL662890.1-201ENST00000396818 632 ntBASIC12.37□□□□□ -0.43
LMO4P61968 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
LMO4P61968 CYP46A4P-201ENST00000414953 267 ntBASIC12.37□□□□□ -0.43
LMO4P61968 DEF8-202ENST00000418391 852 ntTSL 2 BASIC12.37□□□□□ -0.43
LMO4P61968 AL008707.1-201ENST00000422498 534 ntBASIC12.37□□□□□ -0.43
LMO4P61968 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC12.37□□□□□ -0.43
LMO4P61968 AC104073.2-201ENST00000453737 312 ntBASIC12.37□□□□□ -0.43
LMO4P61968 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC12.37□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms