Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.66□□□□□ -0.22
CLRN1P58418 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.66□□□□□ -0.22
CLRN1P58418 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
CLRN1P58418 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.66□□□□□ -0.22
CLRN1P58418 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
CLRN1P58418 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
CLRN1P58418 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.66□□□□□ -0.22
CLRN1P58418 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CLRN1P58418 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC13.65□□□□□ -0.22
CLRN1P58418 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC13.65□□□□□ -0.22
CLRN1P58418 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.65□□□□□ -0.22
CLRN1P58418 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.65□□□□□ -0.22
CLRN1P58418 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
CLRN1P58418 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC13.65□□□□□ -0.22
CLRN1P58418 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
CLRN1P58418 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CLRN1P58418 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CLRN1P58418 AC104457.1-201ENST00000401024 814 ntBASIC13.65□□□□□ -0.22
CLRN1P58418 RAC2-204ENST00000406508 893 ntTSL 5 BASIC13.65□□□□□ -0.22
CLRN1P58418 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
CLRN1P58418 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC13.65□□□□□ -0.22
CLRN1P58418 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC13.65□□□□□ -0.22
CLRN1P58418 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.65□□□□□ -0.22
CLRN1P58418 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
CLRN1P58418 AC004233.3-201ENST00000607794 1269 ntBASIC13.65□□□□□ -0.22
CLRN1P58418 AC004790.1-201ENST00000612686 536 ntBASIC13.65□□□□□ -0.22
CLRN1P58418 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC13.65□□□□□ -0.22
CLRN1P58418 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.65□□□□□ -0.22
CLRN1P58418 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
CLRN1P58418 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.65□□□□□ -0.22
CLRN1P58418 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
CLRN1P58418 REXO1L2P-201ENST00000425429 2069 ntBASIC13.65□□□□□ -0.22
CLRN1P58418 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
CLRN1P58418 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CLRN1P58418 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.65□□□□□ -0.22
CLRN1P58418 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CLRN1P58418 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
CLRN1P58418 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
CLRN1P58418 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.23
CLRN1P58418 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC13.64□□□□□ -0.23
CLRN1P58418 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.64□□□□□ -0.23
CLRN1P58418 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.64□□□□□ -0.23
CLRN1P58418 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.64□□□□□ -0.23
CLRN1P58418 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.64□□□□□ -0.23
CLRN1P58418 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.64□□□□□ -0.23
CLRN1P58418 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 LINC01101-201ENST00000622953 1884 ntBASIC13.64□□□□□ -0.23
CLRN1P58418 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 TDG-209ENST00000544861 1387 ntTSL 2 BASIC13.64□□□□□ -0.23
CLRN1P58418 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC13.64□□□□□ -0.23
CLRN1P58418 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.64□□□□□ -0.23
CLRN1P58418 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC13.64□□□□□ -0.23
CLRN1P58418 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CLRN1P58418 UGT1A2P-201ENST00000454886 866 ntBASIC13.64□□□□□ -0.23
CLRN1P58418 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.64□□□□□ -0.23
CLRN1P58418 VDAC1P7-201ENST00000462417 847 ntBASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms