Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.49□□□□□ -0.25
SOX2P48431 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC13.49□□□□□ -0.25
SOX2P48431 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SOX2P48431 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC13.49□□□□□ -0.25
SOX2P48431 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SOX2P48431 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.49□□□□□ -0.25
SOX2P48431 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SOX2P48431 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SOX2P48431 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SOX2P48431 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SOX2P48431 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
SOX2P48431 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SOX2P48431 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.49□□□□□ -0.25
SOX2P48431 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.48□□□□□ -0.25
SOX2P48431 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13.48□□□□□ -0.25
SOX2P48431 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.48□□□□□ -0.25
SOX2P48431 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
SOX2P48431 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.48□□□□□ -0.25
SOX2P48431 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
SOX2P48431 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 RPS19-201ENST00000221975 500 ntTSL 3 BASIC13.48□□□□□ -0.25
SOX2P48431 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
SOX2P48431 CD81-202ENST00000381036 880 ntTSL 3 BASIC13.48□□□□□ -0.25
SOX2P48431 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC13.48□□□□□ -0.25
SOX2P48431 ACTG1P14-201ENST00000446382 1122 ntBASIC13.48□□□□□ -0.25
SOX2P48431 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC13.48□□□□□ -0.25
SOX2P48431 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC13.48□□□□□ -0.25
SOX2P48431 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
SOX2P48431 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC13.48□□□□□ -0.25
SOX2P48431 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
SOX2P48431 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC13.48□□□□□ -0.25
SOX2P48431 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.48□□□□□ -0.25
SOX2P48431 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.48□□□□□ -0.25
SOX2P48431 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
SOX2P48431 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
SOX2P48431 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
SOX2P48431 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.48□□□□□ -0.25
SOX2P48431 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SOX2P48431 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
SOX2P48431 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.47□□□□□ -0.25
SOX2P48431 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC13.47□□□□□ -0.25
SOX2P48431 REXO1L4P-201ENST00000605109 1937 ntBASIC13.47□□□□□ -0.25
SOX2P48431 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
SOX2P48431 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
SOX2P48431 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 CD82-202ENST00000342935 967 ntTSL 5 BASIC13.47□□□□□ -0.25
SOX2P48431 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC13.47□□□□□ -0.25
SOX2P48431 MCCD1P2-201ENST00000423228 335 ntBASIC13.47□□□□□ -0.25
SOX2P48431 KRT18P32-201ENST00000424695 1287 ntBASIC13.47□□□□□ -0.25
SOX2P48431 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
SOX2P48431 NMU-202ENST00000505262 693 ntTSL 3 BASIC13.47□□□□□ -0.25
SOX2P48431 AC040169.1-201ENST00000565382 521 ntBASIC13.47□□□□□ -0.25
SOX2P48431 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
SOX2P48431 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC13.47□□□□□ -0.25
SOX2P48431 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC13.47□□□□□ -0.25
SOX2P48431 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
SOX2P48431 NME4-212ENST00000621774 904 ntTSL 3 BASIC13.47□□□□□ -0.25
SOX2P48431 C20orf181-201ENST00000623918 480 ntBASIC13.47□□□□□ -0.25
SOX2P48431 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
SOX2P48431 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.47□□□□□ -0.25
SOX2P48431 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SOX2P48431 AP001267.2-201ENST00000532619 2086 ntBASIC13.47□□□□□ -0.25
SOX2P48431 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms