Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC12.54□□□□□ -0.4
NKX2-1P43699 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC12.54□□□□□ -0.4
NKX2-1P43699 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC12.54□□□□□ -0.4
NKX2-1P43699 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 AC011474.4-201ENST00000623523 2076 ntBASIC12.54□□□□□ -0.4
NKX2-1P43699 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
NKX2-1P43699 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
NKX2-1P43699 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC12.54□□□□□ -0.4
NKX2-1P43699 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC12.54□□□□□ -0.4
NKX2-1P43699 AZGP1P1-201ENST00000411909 902 ntBASIC12.54□□□□□ -0.4
NKX2-1P43699 FXR1-221ENST00000491674 365 ntTSL 2 BASIC12.54□□□□□ -0.4
NKX2-1P43699 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC12.54□□□□□ -0.4
NKX2-1P43699 PENK-208ENST00000523051 772 ntTSL 5 BASIC12.54□□□□□ -0.4
NKX2-1P43699 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC12.54□□□□□ -0.4
NKX2-1P43699 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC12.54□□□□□ -0.4
NKX2-1P43699 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC12.54□□□□□ -0.4
NKX2-1P43699 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC12.54□□□□□ -0.4
NKX2-1P43699 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC12.54□□□□□ -0.4
NKX2-1P43699 AC027307.2-201ENST00000591252 911 ntBASIC12.54□□□□□ -0.4
NKX2-1P43699 NKG7-205ENST00000600427 520 ntTSL 3 BASIC12.54□□□□□ -0.4
NKX2-1P43699 MIR7706-201ENST00000613747 67 ntBASIC12.54□□□□□ -0.4
NKX2-1P43699 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC12.54□□□□□ -0.4
NKX2-1P43699 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
NKX2-1P43699 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
NKX2-1P43699 REM2-202ENST00000536884 1331 ntTSL 2 BASIC12.54□□□□□ -0.4
NKX2-1P43699 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
NKX2-1P43699 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC12.54□□□□□ -0.4
NKX2-1P43699 MST1P2-201ENST00000457982 2291 ntBASIC12.54□□□□□ -0.4
NKX2-1P43699 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC12.54□□□□□ -0.4
NKX2-1P43699 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
NKX2-1P43699 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
NKX2-1P43699 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
NKX2-1P43699 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
NKX2-1P43699 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC12.54□□□□□ -0.4
NKX2-1P43699 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC12.53□□□□□ -0.4
NKX2-1P43699 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
NKX2-1P43699 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC12.53□□□□□ -0.4
NKX2-1P43699 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
NKX2-1P43699 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC12.53□□□□□ -0.4
NKX2-1P43699 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 AC007787.1-201ENST00000588095 1583 ntBASIC12.53□□□□□ -0.4
NKX2-1P43699 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC12.53□□□□□ -0.4
NKX2-1P43699 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 HLA-H-201ENST00000383620 1096 ntBASIC12.53□□□□□ -0.4
NKX2-1P43699 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC12.53□□□□□ -0.4
NKX2-1P43699 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC12.53□□□□□ -0.4
NKX2-1P43699 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
NKX2-1P43699 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC12.53□□□□□ -0.4
NKX2-1P43699 AC142381.1-201ENST00000426099 345 ntBASIC12.53□□□□□ -0.4
NKX2-1P43699 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC12.53□□□□□ -0.4
NKX2-1P43699 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC12.53□□□□□ -0.4
NKX2-1P43699 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC12.53□□□□□ -0.4
NKX2-1P43699 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC12.53□□□□□ -0.4
NKX2-1P43699 KRT19P2-202ENST00000557173 1012 ntBASIC12.53□□□□□ -0.4
NKX2-1P43699 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC12.53□□□□□ -0.4
NKX2-1P43699 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 NAA38-207ENST00000576861 556 ntTSL 3 BASIC12.53□□□□□ -0.4
NKX2-1P43699 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC12.53□□□□□ -0.4
NKX2-1P43699 AC008267.7-201ENST00000624570 1194 ntBASIC12.53□□□□□ -0.4
NKX2-1P43699 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC12.53□□□□□ -0.4
NKX2-1P43699 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.53□□□□□ -0.4
NKX2-1P43699 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 AC107918.4-201ENST00000641966 3141 ntBASIC12.53□□□□□ -0.4
NKX2-1P43699 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
NKX2-1P43699 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
NKX2-1P43699 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC12.53□□□□□ -0.4
NKX2-1P43699 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms