Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
SHMT2P34897 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.96□□□□□ -0.01
SHMT2P34897 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.96□□□□□ -0.01
SHMT2P34897 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.96□□□□□ -0.01
SHMT2P34897 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.96□□□□□ -0.01
SHMT2P34897 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
SHMT2P34897 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
SHMT2P34897 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
SHMT2P34897 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.96□□□□□ -0.01
SHMT2P34897 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 AC005912.2-201ENST00000619492 2400 ntBASIC14.96□□□□□ -0.01
SHMT2P34897 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
SHMT2P34897 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SHMT2P34897 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
SHMT2P34897 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SHMT2P34897 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
SHMT2P34897 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.96□□□□□ -0.02
SHMT2P34897 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SHMT2P34897 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SHMT2P34897 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
SHMT2P34897 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
SHMT2P34897 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
SHMT2P34897 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 GRK6P1-201ENST00000400595 1711 ntBASIC14.95□□□□□ -0.02
SHMT2P34897 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.95□□□□□ -0.02
SHMT2P34897 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
SHMT2P34897 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
SHMT2P34897 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
SHMT2P34897 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.95□□□□□ -0.02
SHMT2P34897 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.95□□□□□ -0.02
SHMT2P34897 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
SHMT2P34897 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
SHMT2P34897 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
SHMT2P34897 GIMAP3P-201ENST00000495150 836 ntBASIC14.95□□□□□ -0.02
SHMT2P34897 AC004066.1-201ENST00000502488 802 ntBASIC14.95□□□□□ -0.02
SHMT2P34897 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.95□□□□□ -0.02
SHMT2P34897 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 AP001063.1-201ENST00000568332 529 ntBASIC14.95□□□□□ -0.02
SHMT2P34897 AC009486.1-201ENST00000569860 813 ntBASIC14.95□□□□□ -0.02
SHMT2P34897 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.95□□□□□ -0.02
SHMT2P34897 AC015936.2-201ENST00000593177 259 ntBASIC14.95□□□□□ -0.02
SHMT2P34897 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.95□□□□□ -0.02
SHMT2P34897 AC010319.3-201ENST00000597028 470 ntBASIC14.95□□□□□ -0.02
SHMT2P34897 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.95□□□□□ -0.02
SHMT2P34897 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.95□□□□□ -0.02
SHMT2P34897 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
SHMT2P34897 IGHV3-72-202ENST00000621503 303 ntBASIC14.95□□□□□ -0.02
SHMT2P34897 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.95□□□□□ -0.02
SHMT2P34897 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
SHMT2P34897 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.95□□□□□ -0.02
SHMT2P34897 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.95□□□□□ -0.02
SHMT2P34897 AC007686.3-201ENST00000619017 3487 ntBASIC14.95□□□□□ -0.02
SHMT2P34897 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 AL390755.1-201ENST00000623716 2027 ntBASIC14.95□□□□□ -0.02
SHMT2P34897 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SHMT2P34897 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
SHMT2P34897 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHMT2P34897 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHMT2P34897 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.94□□□□□ -0.02
SHMT2P34897 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHMT2P34897 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHMT2P34897 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.94□□□□□ -0.02
SHMT2P34897 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHMT2P34897 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.94□□□□□ -0.02
SHMT2P34897 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.94□□□□□ -0.02
SHMT2P34897 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.94□□□□□ -0.02
SHMT2P34897 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHMT2P34897 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHMT2P34897 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
SHMT2P34897 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
SHMT2P34897 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.94□□□□□ -0.02
SHMT2P34897 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.94□□□□□ -0.02
SHMT2P34897 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHMT2P34897 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.94□□□□□ -0.02
SHMT2P34897 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.94□□□□□ -0.02
SHMT2P34897 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.94□□□□□ -0.02
SHMT2P34897 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.94□□□□□ -0.02
SHMT2P34897 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.94□□□□□ -0.02
SHMT2P34897 AC132938.2-201ENST00000579188 680 ntBASIC14.94□□□□□ -0.02
SHMT2P34897 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.94□□□□□ -0.02
SHMT2P34897 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.94□□□□□ -0.02
SHMT2P34897 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms