Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CIITAP33076 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CIITAP33076 MIR1202-201ENST00000408529 83 ntBASIC17.07■□□□□ 0.32
CIITAP33076 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC17.07■□□□□ 0.32
CIITAP33076 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC17.07■□□□□ 0.32
CIITAP33076 BNIP3P42-201ENST00000454982 569 ntBASIC17.07■□□□□ 0.32
CIITAP33076 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 RNA5SP412-201ENST00000516234 123 ntBASIC17.07■□□□□ 0.32
CIITAP33076 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC17.07■□□□□ 0.32
CIITAP33076 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 AC023310.1-201ENST00000554836 735 ntBASIC17.07■□□□□ 0.32
CIITAP33076 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC17.07■□□□□ 0.32
CIITAP33076 BNIP3P29-201ENST00000598302 571 ntBASIC17.07■□□□□ 0.32
CIITAP33076 AC011447.5-201ENST00000616168 564 ntBASIC17.07■□□□□ 0.32
CIITAP33076 MIR6752-201ENST00000618442 71 ntBASIC17.07■□□□□ 0.32
CIITAP33076 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CIITAP33076 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.07■□□□□ 0.32
CIITAP33076 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.07■□□□□ 0.32
CIITAP33076 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC17.07■□□□□ 0.32
CIITAP33076 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC17.07■□□□□ 0.32
CIITAP33076 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
CIITAP33076 LINC00528-201ENST00000600723 2160 ntBASIC17.06■□□□□ 0.32
CIITAP33076 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CIITAP33076 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CIITAP33076 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CIITAP33076 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CIITAP33076 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
CIITAP33076 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.06■□□□□ 0.32
CIITAP33076 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CIITAP33076 FAM8A4P-201ENST00000435433 1213 ntBASIC17.06■□□□□ 0.32
CIITAP33076 RPS2P32-201ENST00000439199 892 ntBASIC17.06■□□□□ 0.32
CIITAP33076 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.06■□□□□ 0.32
CIITAP33076 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC17.06■□□□□ 0.32
CIITAP33076 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
CIITAP33076 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CIITAP33076 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC17.06■□□□□ 0.32
CIITAP33076 AC138696.2-201ENST00000607376 223 ntBASIC17.06■□□□□ 0.32
CIITAP33076 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC17.06■□□□□ 0.32
CIITAP33076 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC17.06■□□□□ 0.32
CIITAP33076 AL596257.1-201ENST00000641463 2694 ntBASIC17.06■□□□□ 0.32
CIITAP33076 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC17.06■□□□□ 0.32
CIITAP33076 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.06■□□□□ 0.32
CIITAP33076 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CIITAP33076 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CIITAP33076 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.06■□□□□ 0.32
CIITAP33076 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
CIITAP33076 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.05■□□□□ 0.32
CIITAP33076 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.05■□□□□ 0.32
CIITAP33076 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CIITAP33076 AP000593.2-201ENST00000542775 1433 ntBASIC17.05■□□□□ 0.32
CIITAP33076 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CIITAP33076 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CIITAP33076 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC17.05■□□□□ 0.32
CIITAP33076 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
CIITAP33076 AL138725.1-201ENST00000407347 1314 ntBASIC17.05■□□□□ 0.32
CIITAP33076 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.05■□□□□ 0.32
CIITAP33076 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CIITAP33076 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 RN7SKP230-201ENST00000365642 335 ntBASIC17.05■□□□□ 0.32
CIITAP33076 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.05■□□□□ 0.32
CIITAP33076 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC17.05■□□□□ 0.32
CIITAP33076 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.05■□□□□ 0.32
CIITAP33076 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CIITAP33076 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.05■□□□□ 0.32
CIITAP33076 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.05■□□□□ 0.32
CIITAP33076 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC17.05■□□□□ 0.32
CIITAP33076 AL391280.1-201ENST00000506969 1062 ntBASIC17.05■□□□□ 0.32
CIITAP33076 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms