Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
COL4A5P29400 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.75■□□□□ 0.43
COL4A5P29400 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC17.75■□□□□ 0.43
COL4A5P29400 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A5P29400 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A5P29400 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A5P29400 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
COL4A5P29400 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A5P29400 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC17.74■□□□□ 0.43
COL4A5P29400 DPY19L2P5-201ENST00000456300 331 ntBASIC17.74■□□□□ 0.43
COL4A5P29400 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC17.74■□□□□ 0.43
COL4A5P29400 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
COL4A5P29400 PGAM1P12-201ENST00000505622 748 ntBASIC17.74■□□□□ 0.43
COL4A5P29400 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC17.74■□□□□ 0.43
COL4A5P29400 AC084752.1-201ENST00000509766 622 ntBASIC17.74■□□□□ 0.43
COL4A5P29400 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 RN7SL470P-201ENST00000583069 259 ntBASIC17.74■□□□□ 0.43
COL4A5P29400 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A5P29400 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC17.74■□□□□ 0.43
COL4A5P29400 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.74■□□□□ 0.43
COL4A5P29400 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
COL4A5P29400 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
COL4A5P29400 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A5P29400 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC17.74■□□□□ 0.43
COL4A5P29400 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A5P29400 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A5P29400 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
COL4A5P29400 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 RN7SL277P-201ENST00000481521 288 ntBASIC17.74■□□□□ 0.43
COL4A5P29400 RNA5SP417-201ENST00000516459 108 ntBASIC17.74■□□□□ 0.43
COL4A5P29400 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A5P29400 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A5P29400 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC17.74■□□□□ 0.43
COL4A5P29400 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC17.74■□□□□ 0.43
COL4A5P29400 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC17.74■□□□□ 0.43
COL4A5P29400 AC011247.3-201ENST00000603297 438 ntBASIC17.74■□□□□ 0.43
COL4A5P29400 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC17.73■□□□□ 0.43
COL4A5P29400 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
COL4A5P29400 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A5P29400 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.73■□□□□ 0.43
COL4A5P29400 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A5P29400 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC17.73■□□□□ 0.43
COL4A5P29400 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
COL4A5P29400 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A5P29400 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A5P29400 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC17.73■□□□□ 0.43
COL4A5P29400 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.73■□□□□ 0.43
COL4A5P29400 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A5P29400 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC17.73■□□□□ 0.43
COL4A5P29400 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A5P29400 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A5P29400 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
COL4A5P29400 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A5P29400 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A5P29400 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
COL4A5P29400 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A5P29400 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.73■□□□□ 0.43
COL4A5P29400 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
COL4A5P29400 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC17.73■□□□□ 0.43
COL4A5P29400 AC092638.2-201ENST00000441105 947 ntBASIC17.73■□□□□ 0.43
COL4A5P29400 DUX4L50-201ENST00000455245 715 ntBASIC17.73■□□□□ 0.43
COL4A5P29400 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC17.73■□□□□ 0.43
COL4A5P29400 DBP-202ENST00000593500 712 ntTSL 2 BASIC17.73■□□□□ 0.43
COL4A5P29400 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC17.73■□□□□ 0.43
COL4A5P29400 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.73■□□□□ 0.43
COL4A5P29400 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.73■□□□□ 0.43
COL4A5P29400 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.73■□□□□ 0.43
COL4A5P29400 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A5P29400 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL4A5P29400 AC112693.3-201ENST00000624819 1983 ntBASIC17.72■□□□□ 0.43
COL4A5P29400 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A5P29400 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A5P29400 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A5P29400 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
COL4A5P29400 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.72■□□□□ 0.43
COL4A5P29400 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC17.72■□□□□ 0.43
COL4A5P29400 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.72■□□□□ 0.43
COL4A5P29400 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.72■□□□□ 0.43
COL4A5P29400 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A5P29400 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A5P29400 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A5P29400 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A5P29400 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC17.72■□□□□ 0.43
COL4A5P29400 AP003398.1-201ENST00000531124 318 ntBASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms