Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
MSX1P28360 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
MSX1P28360 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.99□□□□□ -0.17
MSX1P28360 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
MSX1P28360 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
MSX1P28360 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 APOA1-205ENST00000375329 927 ntTSL 2 BASIC13.99□□□□□ -0.17
MSX1P28360 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.99□□□□□ -0.17
MSX1P28360 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
MSX1P28360 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.99□□□□□ -0.17
MSX1P28360 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
MSX1P28360 MTND4LP12-201ENST00000448237 295 ntBASIC13.99□□□□□ -0.17
MSX1P28360 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
MSX1P28360 FAM8A2P-201ENST00000528813 1142 ntBASIC13.99□□□□□ -0.17
MSX1P28360 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC13.99□□□□□ -0.17
MSX1P28360 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.99□□□□□ -0.17
MSX1P28360 AC009486.1-201ENST00000569860 813 ntBASIC13.99□□□□□ -0.17
MSX1P28360 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC13.99□□□□□ -0.17
MSX1P28360 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.99□□□□□ -0.17
MSX1P28360 RPS24-214ENST00000613865 538 ntTSL 5 BASIC13.99□□□□□ -0.17
MSX1P28360 CU634019.7-201ENST00000624153 1185 ntBASIC13.99□□□□□ -0.17
MSX1P28360 FP236241.2-201ENST00000624906 1185 ntBASIC13.99□□□□□ -0.17
MSX1P28360 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.99□□□□□ -0.17
MSX1P28360 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.99□□□□□ -0.17
MSX1P28360 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.99□□□□□ -0.17
MSX1P28360 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC13.99□□□□□ -0.17
MSX1P28360 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
MSX1P28360 FUK-207ENST00000571514 3054 ntTSL 2 BASIC13.99□□□□□ -0.17
MSX1P28360 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC13.98□□□□□ -0.17
MSX1P28360 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
MSX1P28360 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 AC013268.4-201ENST00000637413 2228 ntBASIC13.98□□□□□ -0.17
MSX1P28360 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC13.98□□□□□ -0.17
MSX1P28360 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC13.98□□□□□ -0.17
MSX1P28360 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.98□□□□□ -0.17
MSX1P28360 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
MSX1P28360 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
MSX1P28360 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC13.98□□□□□ -0.17
MSX1P28360 AC114812.1-204ENST00000449669 728 ntBASIC13.98□□□□□ -0.17
MSX1P28360 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
MSX1P28360 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.98□□□□□ -0.17
MSX1P28360 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.98□□□□□ -0.17
MSX1P28360 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.98□□□□□ -0.17
MSX1P28360 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC13.98□□□□□ -0.17
MSX1P28360 AP001063.1-201ENST00000568332 529 ntBASIC13.98□□□□□ -0.17
MSX1P28360 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.98□□□□□ -0.17
MSX1P28360 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC13.98□□□□□ -0.17
MSX1P28360 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
MSX1P28360 ABBA01031660.1-201ENST00000635219 756 ntBASIC13.98□□□□□ -0.17
MSX1P28360 PRSS30P-206ENST00000641773 873 ntBASIC13.98□□□□□ -0.17
MSX1P28360 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
MSX1P28360 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
MSX1P28360 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
MSX1P28360 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MSX1P28360 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MSX1P28360 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms