Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.05□□□□□ -0.32
SDCBPO00560 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 AP000845.1-201ENST00000581677 2131 ntBASIC13.04□□□□□ -0.32
SDCBPO00560 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
SDCBPO00560 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.04□□□□□ -0.32
SDCBPO00560 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC13.04□□□□□ -0.32
SDCBPO00560 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.04□□□□□ -0.32
SDCBPO00560 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 AC079781.5-202ENST00000641784 3743 ntBASIC13.04□□□□□ -0.32
SDCBPO00560 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
SDCBPO00560 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC13.04□□□□□ -0.32
SDCBPO00560 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
SDCBPO00560 FO393414.2-201ENST00000405153 598 ntBASIC13.04□□□□□ -0.32
SDCBPO00560 MIR1233-2-201ENST00000408138 82 ntBASIC13.04□□□□□ -0.32
SDCBPO00560 MIR1233-1-201ENST00000408722 82 ntBASIC13.04□□□□□ -0.32
SDCBPO00560 AC136604.1-201ENST00000418535 575 ntBASIC13.04□□□□□ -0.32
SDCBPO00560 NME4-207ENST00000450036 985 ntTSL 3 BASIC13.04□□□□□ -0.32
SDCBPO00560 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC13.04□□□□□ -0.32
SDCBPO00560 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC13.04□□□□□ -0.32
SDCBPO00560 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
SDCBPO00560 DAD1-205ENST00000543337 501 ntTSL 3 BASIC13.04□□□□□ -0.32
SDCBPO00560 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 PRR29-209ENST00000582540 967 ntTSL 2 BASIC13.04□□□□□ -0.32
SDCBPO00560 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC13.04□□□□□ -0.32
SDCBPO00560 AC079781.4-201ENST00000641908 219 ntBASIC13.04□□□□□ -0.32
SDCBPO00560 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.04□□□□□ -0.32
SDCBPO00560 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
SDCBPO00560 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.04□□□□□ -0.32
SDCBPO00560 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.04□□□□□ -0.32
SDCBPO00560 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
SDCBPO00560 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC13.04□□□□□ -0.32
SDCBPO00560 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
SDCBPO00560 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SDCBPO00560 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
SDCBPO00560 AC087386.2-201ENST00000623212 4637 ntBASIC13.03□□□□□ -0.32
SDCBPO00560 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.03□□□□□ -0.32
SDCBPO00560 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.03□□□□□ -0.32
SDCBPO00560 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
SDCBPO00560 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 HNRNPFP1-201ENST00000391730 1133 ntBASIC13.03□□□□□ -0.32
SDCBPO00560 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
SDCBPO00560 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC13.03□□□□□ -0.32
SDCBPO00560 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC13.03□□□□□ -0.32
SDCBPO00560 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC13.03□□□□□ -0.32
SDCBPO00560 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 AL589739.1-201ENST00000607720 493 ntBASIC13.03□□□□□ -0.32
SDCBPO00560 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
SDCBPO00560 LINC00628-201ENST00000628516 1289 ntBASIC13.03□□□□□ -0.32
SDCBPO00560 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.03□□□□□ -0.32
SDCBPO00560 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC13.03□□□□□ -0.32
SDCBPO00560 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
SDCBPO00560 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
SDCBPO00560 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
SDCBPO00560 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
SDCBPO00560 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
SDCBPO00560 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.03□□□□□ -0.32
SDCBPO00560 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
SDCBPO00560 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SDCBPO00560 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms