Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 PARVG-202ENST00000415224 999 ntTSL 2 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 AC234782.1-201ENST00000451950 919 ntBASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 AC092978.1-202ENST00000637590 1327 ntBASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.61□□□□□ -0.07
PCDHGA1Q9Y5H4 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 SLC16A6P1-201ENST00000413214 1059 ntBASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 AC012618.1-201ENST00000461223 412 ntBASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 AC005324.6-201ENST00000587972 613 ntBASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 AL353770.1-201ENST00000614915 403 ntBASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 AC022188.1-201ENST00000620960 1664 ntBASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 AC006449.5-201ENST00000610658 2098 ntBASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 AC006480.2-201ENST00000609770 1337 ntBASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.6□□□□□ -0.07
PCDHGA1Q9Y5H4 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 CYP2T1P-202ENST00000641596 2535 ntBASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 WT1-209ENST00000530998 2421 ntTSL 2 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 AC063926.3-201ENST00000624734 5658 ntBASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 ACTG1P2-201ENST00000415776 1125 ntBASIC14.59□□□□□ -0.07
PCDHGA1Q9Y5H4 ACTG1P11-201ENST00000425411 1125 ntBASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms