Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC13.57□□□□□ -0.24
MMP28Q9H239 THTPA-204ENST00000554970 569 ntTSL 4 BASIC13.57□□□□□ -0.24
MMP28Q9H239 THTPA-206ENST00000556015 535 ntTSL 3 BASIC13.57□□□□□ -0.24
MMP28Q9H239 PDPK2P-202ENST00000562415 1191 ntBASIC13.57□□□□□ -0.24
MMP28Q9H239 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC13.57□□□□□ -0.24
MMP28Q9H239 AP001160.2-201ENST00000596071 487 ntBASIC13.57□□□□□ -0.24
MMP28Q9H239 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC13.57□□□□□ -0.24
MMP28Q9H239 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
MMP28Q9H239 AC079781.4-201ENST00000641908 219 ntBASIC13.57□□□□□ -0.24
MMP28Q9H239 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
MMP28Q9H239 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
MMP28Q9H239 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
MMP28Q9H239 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.57□□□□□ -0.24
MMP28Q9H239 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
MMP28Q9H239 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
MMP28Q9H239 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.56□□□□□ -0.24
MMP28Q9H239 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
MMP28Q9H239 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC13.56□□□□□ -0.24
MMP28Q9H239 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC13.56□□□□□ -0.24
MMP28Q9H239 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC13.56□□□□□ -0.24
MMP28Q9H239 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
MMP28Q9H239 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
MMP28Q9H239 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
MMP28Q9H239 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
MMP28Q9H239 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 GGCT-205ENST00000409436 954 ntTSL 3 BASIC13.56□□□□□ -0.24
MMP28Q9H239 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 AC004967.1-201ENST00000453589 447 ntBASIC13.56□□□□□ -0.24
MMP28Q9H239 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC13.56□□□□□ -0.24
MMP28Q9H239 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC13.56□□□□□ -0.24
MMP28Q9H239 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC13.56□□□□□ -0.24
MMP28Q9H239 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC13.56□□□□□ -0.24
MMP28Q9H239 AC134684.3-201ENST00000641758 218 ntBASIC13.56□□□□□ -0.24
MMP28Q9H239 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
MMP28Q9H239 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
MMP28Q9H239 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC13.56□□□□□ -0.24
MMP28Q9H239 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 REM2-202ENST00000536884 1331 ntTSL 2 BASIC13.56□□□□□ -0.24
MMP28Q9H239 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
MMP28Q9H239 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
MMP28Q9H239 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC13.56□□□□□ -0.24
MMP28Q9H239 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC13.56□□□□□ -0.24
MMP28Q9H239 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
MMP28Q9H239 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC13.56□□□□□ -0.24
MMP28Q9H239 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.56□□□□□ -0.24
MMP28Q9H239 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
MMP28Q9H239 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
MMP28Q9H239 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
MMP28Q9H239 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 AC130686.1-201ENST00000622936 2466 ntBASIC13.55□□□□□ -0.24
MMP28Q9H239 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
MMP28Q9H239 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
MMP28Q9H239 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
MMP28Q9H239 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms