Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 CICP4-201ENST00000447359 2812 ntBASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 AC107890.1-201ENST00000422478 521 ntBASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 AC004461.2-201ENST00000629517 803 ntBASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 AC087499.5-201ENST00000452760 1342 ntBASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ATG4AQ8WYN0 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ATG4AQ8WYN0 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.83■□□□□ 0.13
ATG4AQ8WYN0 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
ATG4AQ8WYN0 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
ATG4AQ8WYN0 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.13
ATG4AQ8WYN0 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.13
ATG4AQ8WYN0 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ATG4AQ8WYN0 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC15.83■□□□□ 0.13
ATG4AQ8WYN0 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.13
ATG4AQ8WYN0 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ATG4AQ8WYN0 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 AC004449.1-201ENST00000564240 433 ntBASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 AC140878.1-201ENST00000565277 250 ntBASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 AC093028.1-201ENST00000622998 982 ntBASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ATG4AQ8WYN0 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
ATG4AQ8WYN0 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms