Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 BNIP3P1-202ENST00000550043 1585 ntBASIC12.77□□□□□ -0.36
PDLIM3Q53GG5 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC12.77□□□□□ -0.36
PDLIM3Q53GG5 AC131212.3-201ENST00000624087 4219 ntBASIC12.77□□□□□ -0.36
PDLIM3Q53GG5 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
PDLIM3Q53GG5 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
PDLIM3Q53GG5 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
PDLIM3Q53GG5 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
PDLIM3Q53GG5 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
PDLIM3Q53GG5 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
PDLIM3Q53GG5 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
PDLIM3Q53GG5 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC12.77□□□□□ -0.36
PDLIM3Q53GG5 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
PDLIM3Q53GG5 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
PDLIM3Q53GG5 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 AC027369.6-201ENST00000525520 931 ntBASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 AC132938.2-201ENST00000579188 680 ntBASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 AL590560.3-201ENST00000623350 461 ntBASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 AL591163.1-201ENST00000641757 987 ntBASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 AC007541.1-201ENST00000570282 1469 ntBASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC12.77□□□□□ -0.37
PDLIM3Q53GG5 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 GPI-205ENST00000586425 1799 ntTSL 5 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 AC127383.1-201ENST00000444697 1800 ntBASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 AC007292.2-201ENST00000593524 1812 ntBASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 SPCS2P4-201ENST00000436160 681 ntBASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 EEF1DP4-201ENST00000446006 880 ntBASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 REEP4-207ENST00000523293 913 ntTSL 3 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 RARRES2P8-201ENST00000566335 367 ntBASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC12.76□□□□□ -0.37
PDLIM3Q53GG5 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms