Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
COL28A1Q2UY09 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 AL136982.4-201ENST00000437689 1740 ntBASIC14.72□□□□□ -0.05
COL28A1Q2UY09 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 AL365209.1-201ENST00000624418 6473 ntBASIC14.72□□□□□ -0.05
COL28A1Q2UY09 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 MIR1202-201ENST00000408529 83 ntBASIC14.72□□□□□ -0.05
COL28A1Q2UY09 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 Z97180.1-201ENST00000445173 988 ntBASIC14.72□□□□□ -0.05
COL28A1Q2UY09 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 AL603832.2-201ENST00000566195 2125 ntBASIC14.72□□□□□ -0.05
COL28A1Q2UY09 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.72□□□□□ -0.05
COL28A1Q2UY09 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 SUPT4H1P2-201ENST00000501248 353 ntBASIC14.71□□□□□ -0.05
COL28A1Q2UY09 AC126915.1-201ENST00000522847 1038 ntBASIC14.71□□□□□ -0.05
COL28A1Q2UY09 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 CFL1-214ENST00000534769 758 ntTSL 2 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.71□□□□□ -0.05
COL28A1Q2UY09 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL28A1Q2UY09 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL28A1Q2UY09 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
COL28A1Q2UY09 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.71□□□□□ -0.06
COL28A1Q2UY09 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
COL28A1Q2UY09 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
COL28A1Q2UY09 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL28A1Q2UY09 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL28A1Q2UY09 AC006058.4-201ENST00000624016 1670 ntBASIC14.71□□□□□ -0.06
COL28A1Q2UY09 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.71□□□□□ -0.06
COL28A1Q2UY09 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.71□□□□□ -0.06
COL28A1Q2UY09 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
COL28A1Q2UY09 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL28A1Q2UY09 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms