Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TPM4P67936 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC17.17■□□□□ 0.34
TPM4P67936 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.16■□□□□ 0.34
TPM4P67936 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TPM4P67936 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 AC041040.2-201ENST00000622926 2899 ntBASIC17.16■□□□□ 0.34
TPM4P67936 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 AC018442.1-201ENST00000421439 2061 ntBASIC17.16■□□□□ 0.34
TPM4P67936 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 BEND3P1-201ENST00000421591 1944 ntBASIC17.16■□□□□ 0.34
TPM4P67936 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.16■□□□□ 0.34
TPM4P67936 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC17.16■□□□□ 0.34
TPM4P67936 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TPM4P67936 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
TPM4P67936 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.16■□□□□ 0.34
TPM4P67936 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
TPM4P67936 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.16■□□□□ 0.34
TPM4P67936 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
TPM4P67936 TIMM8BP1-201ENST00000452384 211 ntBASIC17.16■□□□□ 0.34
TPM4P67936 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.16■□□□□ 0.34
TPM4P67936 AC015910.1-201ENST00000579400 975 ntBASIC17.16■□□□□ 0.34
TPM4P67936 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.16■□□□□ 0.34
TPM4P67936 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
TPM4P67936 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.16■□□□□ 0.34
TPM4P67936 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.16■□□□□ 0.34
TPM4P67936 AC092902.6-201ENST00000641783 218 ntBASIC17.16■□□□□ 0.34
TPM4P67936 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 AC027601.5-201ENST00000624065 2482 ntBASIC17.16■□□□□ 0.34
TPM4P67936 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
TPM4P67936 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.16■□□□□ 0.34
TPM4P67936 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC17.16■□□□□ 0.34
TPM4P67936 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
TPM4P67936 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TPM4P67936 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 AC007787.1-201ENST00000588095 1583 ntBASIC17.15■□□□□ 0.34
TPM4P67936 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.15■□□□□ 0.34
TPM4P67936 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.15■□□□□ 0.34
TPM4P67936 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.15■□□□□ 0.34
TPM4P67936 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC17.15■□□□□ 0.34
TPM4P67936 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
TPM4P67936 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.15■□□□□ 0.34
TPM4P67936 ADH5P3-201ENST00000433842 1137 ntBASIC17.15■□□□□ 0.34
TPM4P67936 TARDBPP1-201ENST00000442013 1203 ntBASIC17.15■□□□□ 0.34
TPM4P67936 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.15■□□□□ 0.34
TPM4P67936 KRT8P48-201ENST00000515599 1220 ntBASIC17.15■□□□□ 0.34
TPM4P67936 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.15■□□□□ 0.34
TPM4P67936 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.15■□□□□ 0.34
TPM4P67936 AC105021.1-202ENST00000570572 669 ntBASIC17.15■□□□□ 0.34
TPM4P67936 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.15■□□□□ 0.34
TPM4P67936 AL645728.2-202ENST00000641679 227 ntBASIC17.15■□□□□ 0.34
TPM4P67936 AC138969.3-201ENST00000546612 1459 ntBASIC17.15■□□□□ 0.34
TPM4P67936 AC138932.2-201ENST00000548268 1459 ntBASIC17.15■□□□□ 0.34
TPM4P67936 AC126755.4-201ENST00000549796 1459 ntBASIC17.15■□□□□ 0.34
TPM4P67936 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
TPM4P67936 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
TPM4P67936 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC17.15■□□□□ 0.34
TPM4P67936 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TPM4P67936 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
TPM4P67936 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC17.15■□□□□ 0.34
TPM4P67936 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TPM4P67936 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms