Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
YBX1P67809 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
YBX1P67809 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.86□□□□□ -0.03
YBX1P67809 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.86□□□□□ -0.03
YBX1P67809 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 C1QBPP1-201ENST00000400117 770 ntBASIC14.86□□□□□ -0.03
YBX1P67809 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.86□□□□□ -0.03
YBX1P67809 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
YBX1P67809 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.86□□□□□ -0.03
YBX1P67809 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.86□□□□□ -0.03
YBX1P67809 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.86□□□□□ -0.03
YBX1P67809 AC132938.2-201ENST00000579188 680 ntBASIC14.86□□□□□ -0.03
YBX1P67809 AL033527.5-201ENST00000641382 801 ntBASIC14.86□□□□□ -0.03
YBX1P67809 AL591163.1-201ENST00000641757 987 ntBASIC14.86□□□□□ -0.03
YBX1P67809 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
YBX1P67809 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.86□□□□□ -0.03
YBX1P67809 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
YBX1P67809 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.86□□□□□ -0.03
YBX1P67809 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.86□□□□□ -0.03
YBX1P67809 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.86□□□□□ -0.03
YBX1P67809 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
YBX1P67809 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 MSTO2P-201ENST00000314835 1709 ntBASIC14.86□□□□□ -0.03
YBX1P67809 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
YBX1P67809 AP000845.1-201ENST00000581677 2131 ntBASIC14.86□□□□□ -0.03
YBX1P67809 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.86□□□□□ -0.03
YBX1P67809 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
YBX1P67809 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.85□□□□□ -0.03
YBX1P67809 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.85□□□□□ -0.03
YBX1P67809 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.85□□□□□ -0.03
YBX1P67809 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
YBX1P67809 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.85□□□□□ -0.03
YBX1P67809 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.85□□□□□ -0.03
YBX1P67809 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 AL138799.1-201ENST00000448213 1675 ntBASIC14.85□□□□□ -0.03
YBX1P67809 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.85□□□□□ -0.03
YBX1P67809 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 COX5BP8-201ENST00000416911 349 ntBASIC14.85□□□□□ -0.03
YBX1P67809 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.85□□□□□ -0.03
YBX1P67809 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
YBX1P67809 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.85□□□□□ -0.03
YBX1P67809 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.85□□□□□ -0.03
YBX1P67809 INE1-201ENST00000456273 945 ntBASIC14.85□□□□□ -0.03
YBX1P67809 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.85□□□□□ -0.03
YBX1P67809 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.85□□□□□ -0.03
YBX1P67809 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.85□□□□□ -0.03
YBX1P67809 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
YBX1P67809 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.85□□□□□ -0.03
YBX1P67809 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.85□□□□□ -0.03
YBX1P67809 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
YBX1P67809 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
YBX1P67809 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC14.85□□□□□ -0.03
YBX1P67809 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
YBX1P67809 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
YBX1P67809 KRT8P22-201ENST00000562317 1415 ntBASIC14.84□□□□□ -0.03
YBX1P67809 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.84□□□□□ -0.03
YBX1P67809 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
YBX1P67809 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
YBX1P67809 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
YBX1P67809 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.84□□□□□ -0.03
YBX1P67809 AL157414.3-201ENST00000624276 1954 ntBASIC14.84□□□□□ -0.03
YBX1P67809 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.84□□□□□ -0.03
YBX1P67809 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
YBX1P67809 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
YBX1P67809 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
YBX1P67809 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.84□□□□□ -0.03
YBX1P67809 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms