Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC17.77■□□□□ 0.44
COL4A5P29400 HKR1-225ENST00000592168 566 ntTSL 4 BASIC17.77■□□□□ 0.44
COL4A5P29400 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC17.77■□□□□ 0.44
COL4A5P29400 NAMA-206ENST00000605377 509 ntTSL 5 BASIC17.77■□□□□ 0.44
COL4A5P29400 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.44
COL4A5P29400 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A5P29400 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A5P29400 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A5P29400 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.77■□□□□ 0.44
COL4A5P29400 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A5P29400 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.77■□□□□ 0.44
COL4A5P29400 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A5P29400 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC17.77■□□□□ 0.44
COL4A5P29400 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A5P29400 LINC01815-202ENST00000641468 1409 ntBASIC17.77■□□□□ 0.44
COL4A5P29400 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A5P29400 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A5P29400 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC17.77■□□□□ 0.43
COL4A5P29400 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A5P29400 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
COL4A5P29400 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.77■□□□□ 0.43
COL4A5P29400 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A5P29400 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC17.77■□□□□ 0.43
COL4A5P29400 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A5P29400 AP005117.1-202ENST00000581724 1908 ntBASIC17.77■□□□□ 0.43
COL4A5P29400 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A5P29400 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
COL4A5P29400 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC17.77■□□□□ 0.43
COL4A5P29400 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC17.77■□□□□ 0.43
COL4A5P29400 GUSBP10-201ENST00000417412 665 ntBASIC17.77■□□□□ 0.43
COL4A5P29400 AL512306.1-201ENST00000432698 848 ntBASIC17.77■□□□□ 0.43
COL4A5P29400 PSMD4P1-201ENST00000433951 1109 ntBASIC17.77■□□□□ 0.43
COL4A5P29400 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC17.77■□□□□ 0.43
COL4A5P29400 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A5P29400 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.77■□□□□ 0.43
COL4A5P29400 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A5P29400 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
COL4A5P29400 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A5P29400 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.76■□□□□ 0.43
COL4A5P29400 STRN-202ENST00000379213 2254 ntTSL 5 BASIC17.76■□□□□ 0.43
COL4A5P29400 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.76■□□□□ 0.43
COL4A5P29400 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
COL4A5P29400 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A5P29400 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A5P29400 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC17.76■□□□□ 0.43
COL4A5P29400 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A5P29400 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A5P29400 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A5P29400 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC17.76■□□□□ 0.43
COL4A5P29400 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
COL4A5P29400 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
COL4A5P29400 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.76■□□□□ 0.43
COL4A5P29400 FAU-202ENST00000434372 533 ntTSL 2 BASIC17.76■□□□□ 0.43
COL4A5P29400 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC17.76■□□□□ 0.43
COL4A5P29400 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC17.76■□□□□ 0.43
COL4A5P29400 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC17.76■□□□□ 0.43
COL4A5P29400 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
COL4A5P29400 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC17.76■□□□□ 0.43
COL4A5P29400 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC17.76■□□□□ 0.43
COL4A5P29400 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC17.76■□□□□ 0.43
COL4A5P29400 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC17.76■□□□□ 0.43
COL4A5P29400 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A5P29400 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A5P29400 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A5P29400 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.76■□□□□ 0.43
COL4A5P29400 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.76■□□□□ 0.43
COL4A5P29400 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.76■□□□□ 0.43
COL4A5P29400 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A5P29400 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
COL4A5P29400 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A5P29400 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A5P29400 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A5P29400 AC087481.3-201ENST00000602886 1894 ntBASIC17.75■□□□□ 0.43
COL4A5P29400 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A5P29400 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A5P29400 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
COL4A5P29400 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC17.75■□□□□ 0.43
COL4A5P29400 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
COL4A5P29400 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.75■□□□□ 0.43
COL4A5P29400 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.75■□□□□ 0.43
COL4A5P29400 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC17.75■□□□□ 0.43
COL4A5P29400 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A5P29400 NHP2-202ENST00000314397 599 ntTSL 2 BASIC17.75■□□□□ 0.43
COL4A5P29400 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A5P29400 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC17.75■□□□□ 0.43
COL4A5P29400 AL035414.1-201ENST00000451327 857 ntBASIC17.75■□□□□ 0.43
COL4A5P29400 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A5P29400 RHEB-207ENST00000496004 744 ntTSL 2 BASIC17.75■□□□□ 0.43
COL4A5P29400 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
COL4A5P29400 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC17.75■□□□□ 0.43
COL4A5P29400 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC17.75■□□□□ 0.43
COL4A5P29400 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A5P29400 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A5P29400 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC17.75■□□□□ 0.43
COL4A5P29400 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A5P29400 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A5P29400 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A5P29400 AHCYP4-201ENST00000419201 1315 ntBASIC17.75■□□□□ 0.43
COL4A5P29400 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.75■□□□□ 0.43
COL4A5P29400 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms