Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC17.38■□□□□ 0.37
SMARCA1P28370 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 LINC00528-201ENST00000600723 2160 ntBASIC17.38■□□□□ 0.37
SMARCA1P28370 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
SMARCA1P28370 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.38■□□□□ 0.37
SMARCA1P28370 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC17.38■□□□□ 0.37
SMARCA1P28370 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.38■□□□□ 0.37
SMARCA1P28370 AL391280.1-201ENST00000506969 1062 ntBASIC17.38■□□□□ 0.37
SMARCA1P28370 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC17.38■□□□□ 0.37
SMARCA1P28370 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC17.38■□□□□ 0.37
SMARCA1P28370 NAA38-206ENST00000576384 424 ntTSL 2 BASIC17.38■□□□□ 0.37
SMARCA1P28370 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.38■□□□□ 0.37
SMARCA1P28370 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC17.38■□□□□ 0.37
SMARCA1P28370 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC17.38■□□□□ 0.37
SMARCA1P28370 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SMARCA1P28370 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
SMARCA1P28370 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMARCA1P28370 POR-201ENST00000394893 2532 ntTSL 5 BASIC17.38■□□□□ 0.37
SMARCA1P28370 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 MARS-233ENST00000628866 2583 ntTSL 5 BASIC17.37■□□□□ 0.37
SMARCA1P28370 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC17.37■□□□□ 0.37
SMARCA1P28370 HYMAI-201ENST00000635591 3347 ntBASIC17.37■□□□□ 0.37
SMARCA1P28370 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.37■□□□□ 0.37
SMARCA1P28370 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.37■□□□□ 0.37
SMARCA1P28370 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.37■□□□□ 0.37
SMARCA1P28370 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.37■□□□□ 0.37
SMARCA1P28370 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.37■□□□□ 0.37
SMARCA1P28370 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC17.37■□□□□ 0.37
SMARCA1P28370 RN7SKP175-201ENST00000408472 289 ntBASIC17.37■□□□□ 0.37
SMARCA1P28370 AC004945.1-201ENST00000416738 983 ntBASIC17.37■□□□□ 0.37
SMARCA1P28370 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.37■□□□□ 0.37
SMARCA1P28370 CNN2P10-201ENST00000443067 918 ntBASIC17.37■□□□□ 0.37
SMARCA1P28370 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 COX5BP1-201ENST00000507622 393 ntBASIC17.37■□□□□ 0.37
SMARCA1P28370 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.37■□□□□ 0.37
SMARCA1P28370 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC17.37■□□□□ 0.37
SMARCA1P28370 BX088702.1-201ENST00000610784 235 ntBASIC17.37■□□□□ 0.37
SMARCA1P28370 Six3os1_5.1-201ENST00000611000 271 ntBASIC17.37■□□□□ 0.37
SMARCA1P28370 ZACNP1-201ENST00000612259 710 ntBASIC17.37■□□□□ 0.37
SMARCA1P28370 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.37■□□□□ 0.37
SMARCA1P28370 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
SMARCA1P28370 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC17.37■□□□□ 0.37
SMARCA1P28370 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SMARCA1P28370 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
SMARCA1P28370 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.37■□□□□ 0.37
SMARCA1P28370 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 AL354989.2-201ENST00000435838 1540 ntBASIC17.37■□□□□ 0.37
SMARCA1P28370 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMARCA1P28370 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.36■□□□□ 0.37
SMARCA1P28370 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 NFIC-211ENST00000641145 8399 ntBASIC17.36■□□□□ 0.37
SMARCA1P28370 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.36■□□□□ 0.37
SMARCA1P28370 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SMARCA1P28370 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.36■□□□□ 0.37
SMARCA1P28370 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
SMARCA1P28370 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SMARCA1P28370 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC17.36■□□□□ 0.37
SMARCA1P28370 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.36■□□□□ 0.37
SMARCA1P28370 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SMARCA1P28370 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms