Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
HLA-DOAP06340 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC17.86■□□□□ 0.45
HLA-DOAP06340 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
HLA-DOAP06340 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.86■□□□□ 0.45
HLA-DOAP06340 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DOAP06340 AC126915.1-201ENST00000522847 1038 ntBASIC17.86■□□□□ 0.45
HLA-DOAP06340 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DOAP06340 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DOAP06340 AC020914.3-201ENST00000594712 304 ntBASIC17.86■□□□□ 0.45
HLA-DOAP06340 KC6-205ENST00000599934 556 ntTSL 4 BASIC17.86■□□□□ 0.45
HLA-DOAP06340 AC007663.3-201ENST00000609632 465 ntBASIC17.86■□□□□ 0.45
HLA-DOAP06340 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC17.86■□□□□ 0.45
HLA-DOAP06340 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DOAP06340 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DOAP06340 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.86■□□□□ 0.45
HLA-DOAP06340 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.86■□□□□ 0.45
HLA-DOAP06340 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DOAP06340 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
HLA-DOAP06340 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
HLA-DOAP06340 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DOAP06340 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DOAP06340 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DOAP06340 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC17.85■□□□□ 0.45
HLA-DOAP06340 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DOAP06340 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DOAP06340 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.85■□□□□ 0.45
HLA-DOAP06340 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.85■□□□□ 0.45
HLA-DOAP06340 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
HLA-DOAP06340 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC17.85■□□□□ 0.45
HLA-DOAP06340 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
HLA-DOAP06340 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.85■□□□□ 0.45
HLA-DOAP06340 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC17.85■□□□□ 0.45
HLA-DOAP06340 CALR4P-201ENST00000431943 946 ntBASIC17.85■□□□□ 0.45
HLA-DOAP06340 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.85■□□□□ 0.45
HLA-DOAP06340 AC018735.1-201ENST00000437208 1502 ntBASIC17.85■□□□□ 0.45
HLA-DOAP06340 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DOAP06340 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DOAP06340 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC17.85■□□□□ 0.45
HLA-DOAP06340 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17.85■□□□□ 0.45
HLA-DOAP06340 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC17.85■□□□□ 0.45
HLA-DOAP06340 SCARNA20.5-201ENST00000516991 142 ntBASIC17.85■□□□□ 0.45
HLA-DOAP06340 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DOAP06340 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DOAP06340 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
HLA-DOAP06340 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.85■□□□□ 0.45
HLA-DOAP06340 NKG7-204ENST00000595217 816 ntTSL 2 BASIC17.85■□□□□ 0.45
HLA-DOAP06340 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC17.85■□□□□ 0.45
HLA-DOAP06340 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DOAP06340 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DOAP06340 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.84■□□□□ 0.45
HLA-DOAP06340 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DOAP06340 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.84■□□□□ 0.45
HLA-DOAP06340 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC17.84■□□□□ 0.45
HLA-DOAP06340 AC138028.6-201ENST00000616106 1482 ntBASIC17.84■□□□□ 0.45
HLA-DOAP06340 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
HLA-DOAP06340 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
HLA-DOAP06340 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DOAP06340 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DOAP06340 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DOAP06340 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DOAP06340 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC17.84■□□□□ 0.45
HLA-DOAP06340 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
HLA-DOAP06340 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DOAP06340 CSH2-202ENST00000345366 598 ntTSL 5 BASIC17.84■□□□□ 0.45
HLA-DOAP06340 AL354877.1-201ENST00000424412 413 ntBASIC17.84■□□□□ 0.45
HLA-DOAP06340 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC17.84■□□□□ 0.45
HLA-DOAP06340 AKR7A2P1-201ENST00000460134 915 ntBASIC17.84■□□□□ 0.45
HLA-DOAP06340 AC100850.1-201ENST00000506768 649 ntBASIC17.84■□□□□ 0.45
HLA-DOAP06340 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC17.84■□□□□ 0.45
HLA-DOAP06340 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC17.84■□□□□ 0.45
HLA-DOAP06340 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DOAP06340 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DOAP06340 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DOAP06340 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DOAP06340 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
HLA-DOAP06340 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
HLA-DOAP06340 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
HLA-DOAP06340 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC17.83■□□□□ 0.45
HLA-DOAP06340 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
HLA-DOAP06340 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.45
HLA-DOAP06340 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HLA-DOAP06340 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HLA-DOAP06340 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HLA-DOAP06340 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HLA-DOAP06340 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
HLA-DOAP06340 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HLA-DOAP06340 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC17.83■□□□□ 0.44
HLA-DOAP06340 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HLA-DOAP06340 RN7SKP175-201ENST00000408472 289 ntBASIC17.83■□□□□ 0.44
HLA-DOAP06340 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC17.83■□□□□ 0.44
HLA-DOAP06340 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC17.83■□□□□ 0.44
HLA-DOAP06340 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC17.83■□□□□ 0.44
HLA-DOAP06340 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HLA-DOAP06340 CDC23-208ENST00000505120 455 ntTSL 3 BASIC17.83■□□□□ 0.44
HLA-DOAP06340 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC17.83■□□□□ 0.44
HLA-DOAP06340 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC17.83■□□□□ 0.44
HLA-DOAP06340 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.83■□□□□ 0.44
HLA-DOAP06340 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC17.83■□□□□ 0.44
HLA-DOAP06340 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.83■□□□□ 0.44
HLA-DOAP06340 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms