Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 EIF3FP3-201ENST00000434851 1086 ntBASIC15.44■□□□□ 0.06
HLA-DQB2P05538 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 RN7SL752P-201ENST00000463779 287 ntBASIC15.44■□□□□ 0.06
HLA-DQB2P05538 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 AC022137.2-201ENST00000503482 481 ntBASIC15.44■□□□□ 0.06
HLA-DQB2P05538 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 AL596325.1-201ENST00000563991 1082 ntBASIC15.44■□□□□ 0.06
HLA-DQB2P05538 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DQB2P05538 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 CICP14-201ENST00000629111 2732 ntBASIC15.43■□□□□ 0.06
HLA-DQB2P05538 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 ACKR1-201ENST00000368121 1240 ntBASIC15.43■□□□□ 0.06
HLA-DQB2P05538 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 ACTBP8-201ENST00000403258 1108 ntBASIC15.43■□□□□ 0.06
HLA-DQB2P05538 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 AL035633.1-201ENST00000406139 838 ntBASIC15.43■□□□□ 0.06
HLA-DQB2P05538 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 DUX4L47-201ENST00000566374 394 ntBASIC15.43■□□□□ 0.06
HLA-DQB2P05538 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DQB2P05538 KRT8P35-201ENST00000483942 1338 ntBASIC15.43■□□□□ 0.06
HLA-DQB2P05538 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQB2P05538 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQB2P05538 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQB2P05538 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
HLA-DQB2P05538 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQB2P05538 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQB2P05538 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.42■□□□□ 0.06
HLA-DQB2P05538 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQB2P05538 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQB2P05538 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
HLA-DQB2P05538 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
HLA-DQB2P05538 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.42■□□□□ 0.06
HLA-DQB2P05538 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQB2P05538 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.42■□□□□ 0.06
HLA-DQB2P05538 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQB2P05538 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms