Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.11■□□□□ 0.17
RTN3O95197 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
RTN3O95197 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
RTN3O95197 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.11■□□□□ 0.17
RTN3O95197 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.11■□□□□ 0.17
RTN3O95197 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.11■□□□□ 0.17
RTN3O95197 AL139094.1-201ENST00000405549 1188 ntBASIC16.11■□□□□ 0.17
RTN3O95197 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.11■□□□□ 0.17
RTN3O95197 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.11■□□□□ 0.17
RTN3O95197 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 AP000812.2-201ENST00000538934 718 ntBASIC16.11■□□□□ 0.17
RTN3O95197 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.11■□□□□ 0.17
RTN3O95197 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
RTN3O95197 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.11■□□□□ 0.17
RTN3O95197 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
RTN3O95197 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 AL158070.2-201ENST00000623713 1621 ntBASIC16.11■□□□□ 0.17
RTN3O95197 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.11■□□□□ 0.17
RTN3O95197 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 PPP1R26P4-201ENST00000619065 3527 ntBASIC16.11■□□□□ 0.17
RTN3O95197 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.11■□□□□ 0.17
RTN3O95197 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RTN3O95197 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
RTN3O95197 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
RTN3O95197 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RTN3O95197 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RTN3O95197 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
RTN3O95197 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
RTN3O95197 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.1■□□□□ 0.17
RTN3O95197 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RTN3O95197 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RTN3O95197 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RTN3O95197 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.1■□□□□ 0.17
RTN3O95197 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RTN3O95197 ZBTB12BP-201ENST00000314232 1122 ntBASIC16.1■□□□□ 0.17
RTN3O95197 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC16.1■□□□□ 0.17
RTN3O95197 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.1■□□□□ 0.17
RTN3O95197 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.1■□□□□ 0.17
RTN3O95197 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.1■□□□□ 0.17
RTN3O95197 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.1■□□□□ 0.17
RTN3O95197 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC16.1■□□□□ 0.17
RTN3O95197 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.1■□□□□ 0.17
RTN3O95197 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RTN3O95197 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.1■□□□□ 0.17
RTN3O95197 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
RTN3O95197 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.1■□□□□ 0.17
RTN3O95197 AC025279.2-201ENST00000569730 653 ntBASIC16.1■□□□□ 0.17
RTN3O95197 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16.1■□□□□ 0.17
RTN3O95197 GNRHR2-203ENST00000581100 1187 ntBASIC16.1■□□□□ 0.17
RTN3O95197 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.1■□□□□ 0.17
RTN3O95197 AC145423.3-201ENST00000615987 467 ntBASIC16.1■□□□□ 0.17
RTN3O95197 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.1■□□□□ 0.17
RTN3O95197 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
RTN3O95197 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
RTN3O95197 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RTN3O95197 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
RTN3O95197 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RTN3O95197 AL359183.1-201ENST00000623796 2132 ntBASIC16.1■□□□□ 0.17
RTN3O95197 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC16.1■□□□□ 0.17
RTN3O95197 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.1■□□□□ 0.17
RTN3O95197 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RTN3O95197 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RTN3O95197 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RTN3O95197 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
RTN3O95197 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
RTN3O95197 AC087481.3-201ENST00000602886 1894 ntBASIC16.1■□□□□ 0.17
RTN3O95197 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
RTN3O95197 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.09■□□□□ 0.17
RTN3O95197 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC16.09■□□□□ 0.17
RTN3O95197 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.09■□□□□ 0.17
RTN3O95197 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
RTN3O95197 ANKRD19P-201ENST00000338192 862 ntBASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms