Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.06□□□□□ -0.32
SDCBPO00560 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.06□□□□□ -0.32
SDCBPO00560 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 BX640514.1-201ENST00000583223 1918 ntBASIC13.06□□□□□ -0.32
SDCBPO00560 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.06□□□□□ -0.32
SDCBPO00560 AC006504.5-208ENST00000588784 2401 ntBASIC13.06□□□□□ -0.32
SDCBPO00560 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC13.06□□□□□ -0.32
SDCBPO00560 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 RPL5P21-201ENST00000404620 815 ntBASIC13.06□□□□□ -0.32
SDCBPO00560 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC13.06□□□□□ -0.32
SDCBPO00560 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC13.06□□□□□ -0.32
SDCBPO00560 AZGP1P1-201ENST00000411909 902 ntBASIC13.06□□□□□ -0.32
SDCBPO00560 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 AP006288.1-201ENST00000446065 395 ntBASIC13.06□□□□□ -0.32
SDCBPO00560 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 SUOX-214ENST00000551841 906 ntTSL 3 BASIC13.06□□□□□ -0.32
SDCBPO00560 BANF1P1-201ENST00000553684 263 ntBASIC13.06□□□□□ -0.32
SDCBPO00560 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC13.06□□□□□ -0.32
SDCBPO00560 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC13.06□□□□□ -0.32
SDCBPO00560 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC13.06□□□□□ -0.32
SDCBPO00560 AC027601.5-201ENST00000624065 2482 ntBASIC13.06□□□□□ -0.32
SDCBPO00560 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.06□□□□□ -0.32
SDCBPO00560 REXO1L2P-201ENST00000425429 2069 ntBASIC13.06□□□□□ -0.32
SDCBPO00560 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.06□□□□□ -0.32
SDCBPO00560 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC13.06□□□□□ -0.32
SDCBPO00560 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SDCBPO00560 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
SDCBPO00560 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC13.05□□□□□ -0.32
SDCBPO00560 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
SDCBPO00560 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.05□□□□□ -0.32
SDCBPO00560 AC018529.2-202ENST00000611482 3087 ntBASIC13.05□□□□□ -0.32
SDCBPO00560 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
SDCBPO00560 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 IMPDH1P4-201ENST00000445028 1534 ntBASIC13.05□□□□□ -0.32
SDCBPO00560 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC13.05□□□□□ -0.32
SDCBPO00560 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.05□□□□□ -0.32
SDCBPO00560 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
SDCBPO00560 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
SDCBPO00560 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC13.05□□□□□ -0.32
SDCBPO00560 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC13.05□□□□□ -0.32
SDCBPO00560 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC13.05□□□□□ -0.32
SDCBPO00560 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC13.05□□□□□ -0.32
SDCBPO00560 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC13.05□□□□□ -0.32
SDCBPO00560 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC13.05□□□□□ -0.32
SDCBPO00560 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC13.05□□□□□ -0.32
SDCBPO00560 METTL23-205ENST00000588302 925 ntTSL 5 BASIC13.05□□□□□ -0.32
SDCBPO00560 AP001059.3-201ENST00000619053 235 ntBASIC13.05□□□□□ -0.32
SDCBPO00560 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC13.05□□□□□ -0.32
SDCBPO00560 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.05□□□□□ -0.32
SDCBPO00560 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
SDCBPO00560 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.05□□□□□ -0.32
SDCBPO00560 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.05□□□□□ -0.32
SDCBPO00560 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.05□□□□□ -0.32
SDCBPO00560 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
SDCBPO00560 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SDCBPO00560 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms