Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.73□□□□□ -0.05
SLC28A1O00337 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.73□□□□□ -0.05
SLC28A1O00337 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.73□□□□□ -0.05
SLC28A1O00337 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.73□□□□□ -0.05
SLC28A1O00337 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SLC28A1O00337 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SLC28A1O00337 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.73□□□□□ -0.05
SLC28A1O00337 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SLC28A1O00337 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.73□□□□□ -0.05
SLC28A1O00337 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SLC28A1O00337 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.73□□□□□ -0.05
SLC28A1O00337 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SLC28A1O00337 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
SLC28A1O00337 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.73□□□□□ -0.05
SLC28A1O00337 MTHFR-210ENST00000641407 2387 ntBASIC14.73□□□□□ -0.05
SLC28A1O00337 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.73□□□□□ -0.05
SLC28A1O00337 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SLC28A1O00337 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.73□□□□□ -0.05
SLC28A1O00337 AC018529.2-202ENST00000611482 3087 ntBASIC14.72□□□□□ -0.05
SLC28A1O00337 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.72□□□□□ -0.05
SLC28A1O00337 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
SLC28A1O00337 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
SLC28A1O00337 AL360270.3-201ENST00000609118 1348 ntBASIC14.72□□□□□ -0.05
SLC28A1O00337 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.72□□□□□ -0.05
SLC28A1O00337 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
SLC28A1O00337 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
SLC28A1O00337 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
SLC28A1O00337 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.72□□□□□ -0.05
SLC28A1O00337 AC092580.3-201ENST00000430932 139 ntBASIC14.72□□□□□ -0.05
SLC28A1O00337 FAM86GP-201ENST00000448322 971 ntBASIC14.72□□□□□ -0.05
SLC28A1O00337 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.72□□□□□ -0.05
SLC28A1O00337 MEIS3P1-201ENST00000495167 958 ntBASIC14.72□□□□□ -0.05
SLC28A1O00337 AC097493.3-201ENST00000509725 367 ntBASIC14.72□□□□□ -0.05
SLC28A1O00337 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.72□□□□□ -0.05
SLC28A1O00337 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.72□□□□□ -0.05
SLC28A1O00337 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.72□□□□□ -0.05
SLC28A1O00337 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.72□□□□□ -0.05
SLC28A1O00337 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 AL590560.3-201ENST00000623350 461 ntBASIC14.72□□□□□ -0.05
SLC28A1O00337 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 AC100757.3-201ENST00000622361 1406 ntBASIC14.72□□□□□ -0.05
SLC28A1O00337 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.72□□□□□ -0.05
SLC28A1O00337 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
SLC28A1O00337 SNX18-202ENST00000343017 3140 ntBASIC14.72□□□□□ -0.05
SLC28A1O00337 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
SLC28A1O00337 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
SLC28A1O00337 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SLC28A1O00337 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.71□□□□□ -0.05
SLC28A1O00337 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SLC28A1O00337 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SLC28A1O00337 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
SLC28A1O00337 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SLC28A1O00337 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
SLC28A1O00337 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.71□□□□□ -0.05
SLC28A1O00337 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SLC28A1O00337 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SLC28A1O00337 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SLC28A1O00337 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SLC28A1O00337 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.71□□□□□ -0.05
SLC28A1O00337 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.71□□□□□ -0.05
SLC28A1O00337 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SLC28A1O00337 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SLC28A1O00337 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SLC28A1O00337 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SLC28A1O00337 AC113367.3-201ENST00000508316 1912 ntBASIC14.71□□□□□ -0.05
SLC28A1O00337 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
SLC28A1O00337 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.71□□□□□ -0.05
SLC28A1O00337 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.71□□□□□ -0.05
SLC28A1O00337 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SLC28A1O00337 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SLC28A1O00337 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.71□□□□□ -0.05
SLC28A1O00337 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.71□□□□□ -0.05
SLC28A1O00337 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms