Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 API5-202ENST00000420461 2009 ntTSL 2 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 AL596257.1-201ENST00000641463 2694 ntBASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 FO681548.1-201ENST00000455617 1132 ntBASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 AC022137.2-201ENST00000503482 481 ntBASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 AL583810.1-201ENST00000553344 1045 ntBASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 KSR1-207ENST00000578981 748 ntTSL 4 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 AL138799.1-201ENST00000448213 1675 ntBASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
NPIPA2E9PIF3 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 BRWD1P1-201ENST00000401091 371 ntBASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 RPL5P21-201ENST00000404620 815 ntBASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 KRT18P25-201ENST00000508931 1278 ntBASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 AP000812.2-201ENST00000538934 718 ntBASIC13.92□□□□□ -0.18
NPIPA2E9PIF3 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms