Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 TMCO5B-205ENST00000530020 894 ntBASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 MEG3_2.1-201ENST00000611456 105 ntBASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 CYP2T1P-202ENST00000641596 2535 ntBASIC18.25■□□□□ 0.51
ZC3H4Q9UPT8 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 NDUFS6P1-201ENST00000485187 316 ntBASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 AP003398.1-201ENST00000531124 318 ntBASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 AC244250.3-201ENST00000620749 366 ntBASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 FRMPD2B-201ENST00000431305 1347 ntBASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
ZC3H4Q9UPT8 BAK1P1-201ENST00000317045 636 ntBASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 AREG-202ENST00000502307 956 ntTSL 5 BASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 AC093752.3-201ENST00000567343 901 ntBASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 PHBP15-201ENST00000574228 665 ntBASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 HPN-206ENST00000597419 1212 ntTSL 5 BASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 MIR6769A-201ENST00000617340 73 ntBASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 AC138466.5-201ENST00000624002 808 ntBASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ZC3H4Q9UPT8 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms