Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC28.63■■■□□ 2.17
SHROOM4Q9ULL8 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 CLUHP2-201ENST00000426660 1303 ntBASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 AC078991.1-201ENST00000437297 610 ntBASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
SHROOM4Q9ULL8 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 MIR1227-201ENST00000408484 88 ntBASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 RPL18P13-201ENST00000478088 569 ntBASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 AC026434.2-201ENST00000506094 1078 ntBASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 RTN3P1-201ENST00000536295 711 ntBASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 AL160314.3-201ENST00000556041 767 ntBASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 AC141586.1-203ENST00000567242 366 ntBASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 AL132994.2-201ENST00000603120 687 ntBASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 AC012044.1-201ENST00000603431 297 ntBASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 KRT8P4-201ENST00000509735 1454 ntBASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 AC132872.4-202ENST00000622924 2756 ntBASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.17
SHROOM4Q9ULL8 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 AC138894.2-201ENST00000602838 371 ntBASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 AC087045.2-201ENST00000606279 1003 ntBASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 AC092171.5-201ENST00000608012 942 ntBASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM4Q9ULL8 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 AC009955.4-201ENST00000597192 544 ntBASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 AL162426.1-201ENST00000624141 743 ntBASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 AL645728.2-202ENST00000641679 227 ntBASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 AC004923.1-202ENST00000642106 209 ntBASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 GHSR-202ENST00000427970 912 ntBASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 AL139008.1-201ENST00000437894 228 ntBASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC28.59■■■□□ 2.17
SHROOM4Q9ULL8 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC28.59■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms