Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMA1Q9UHB6 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 KRT18P13-201ENST00000400056 1290 ntBASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 AL353779.1-201ENST00000434793 351 ntBASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 MEIS3P1-201ENST00000495167 958 ntBASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 AC097493.3-201ENST00000509725 367 ntBASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 AC092865.5-201ENST00000545435 363 ntBASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 AL590560.3-201ENST00000623350 461 ntBASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 AL137783.1-201ENST00000623494 1896 ntBASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 CLK3P2-201ENST00000427566 1453 ntBASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMA1Q9UHB6 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 PCDHA3-202ENST00000532566 4594 ntBASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 DRD5P1-201ENST00000456605 1438 ntBASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 AC100757.3-201ENST00000622361 1406 ntBASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 AC107890.1-201ENST00000422478 521 ntBASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 DNAJB3-202ENST00000449667 1266 ntBASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 AL158211.3-201ENST00000607385 239 ntBASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 AC005840.4-201ENST00000541242 2494 ntBASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 AC092135.3-201ENST00000624151 1846 ntBASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMA1Q9UHB6 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms