Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 MRPS18AP1-201ENST00000414458 589 ntBASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 MEP1AP4-201ENST00000423244 1087 ntBASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 RN7SL399P-201ENST00000471648 279 ntBASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 AC093214.1-201ENST00000511688 1107 ntBASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS29Q9UBQ0 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 AC026410.3-201ENST00000514280 936 ntBASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 AC023310.3-201ENST00000557027 670 ntBASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 AC100756.1-201ENST00000562736 682 ntBASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 AC138749.3-201ENST00000567691 622 ntBASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 GPALPP1-207ENST00000611650 899 ntBASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 AC116165.1-201ENST00000611806 668 ntBASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS29Q9UBQ0 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms