Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.45□□□□□ -0.1
NR1H4Q96RI1 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NR1H4Q96RI1 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
NR1H4Q96RI1 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 MED16-201ENST00000269814 1199 ntTSL 5 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 GPX1P2-201ENST00000429271 606 ntBASIC14.44□□□□□ -0.1
NR1H4Q96RI1 SLC25A6P2-201ENST00000497974 877 ntBASIC14.44□□□□□ -0.1
NR1H4Q96RI1 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 AC021097.1-201ENST00000607902 574 ntBASIC14.44□□□□□ -0.1
NR1H4Q96RI1 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 INE2-201ENST00000630399 1874 ntBASIC14.44□□□□□ -0.1
NR1H4Q96RI1 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC14.44□□□□□ -0.1
NR1H4Q96RI1 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 RBSN-204ENST00000449050 903 ntTSL 2 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 AC132008.2-207ENST00000454517 770 ntBASIC14.43□□□□□ -0.1
NR1H4Q96RI1 BX005266.1-201ENST00000473402 457 ntBASIC14.43□□□□□ -0.1
NR1H4Q96RI1 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
NR1H4Q96RI1 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms