Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.39■□□□□ 0.37
ERCC4Q92889 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.39■□□□□ 0.37
ERCC4Q92889 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
ERCC4Q92889 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ERCC4Q92889 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
ERCC4Q92889 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ERCC4Q92889 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
ERCC4Q92889 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ERCC4Q92889 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
ERCC4Q92889 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ERCC4Q92889 Z97205.2-201ENST00000564697 1639 ntBASIC17.39■□□□□ 0.37
ERCC4Q92889 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
ERCC4Q92889 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
ERCC4Q92889 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ERCC4Q92889 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC17.39■□□□□ 0.37
ERCC4Q92889 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.39■□□□□ 0.37
ERCC4Q92889 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
ERCC4Q92889 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC17.38■□□□□ 0.37
ERCC4Q92889 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
ERCC4Q92889 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
ERCC4Q92889 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.38■□□□□ 0.37
ERCC4Q92889 AC211486.1-202ENST00000416371 468 ntBASIC17.38■□□□□ 0.37
ERCC4Q92889 GHSR-202ENST00000427970 912 ntBASIC17.38■□□□□ 0.37
ERCC4Q92889 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.38■□□□□ 0.37
ERCC4Q92889 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.38■□□□□ 0.37
ERCC4Q92889 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
ERCC4Q92889 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.38■□□□□ 0.37
ERCC4Q92889 AC211476.1-201ENST00000503899 468 ntBASIC17.38■□□□□ 0.37
ERCC4Q92889 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.38■□□□□ 0.37
ERCC4Q92889 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.38■□□□□ 0.37
ERCC4Q92889 MIR3687-2-201ENST00000577708 61 ntBASIC17.38■□□□□ 0.37
ERCC4Q92889 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
ERCC4Q92889 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.38■□□□□ 0.37
ERCC4Q92889 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.38■□□□□ 0.37
ERCC4Q92889 MIR3687-1-201ENST00000614492 61 ntBASIC17.38■□□□□ 0.37
ERCC4Q92889 AP001059.3-201ENST00000619053 235 ntBASIC17.38■□□□□ 0.37
ERCC4Q92889 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.38■□□□□ 0.37
ERCC4Q92889 AL033527.5-202ENST00000641632 1098 ntBASIC17.38■□□□□ 0.37
ERCC4Q92889 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC17.38■□□□□ 0.37
ERCC4Q92889 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
ERCC4Q92889 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.38■□□□□ 0.37
ERCC4Q92889 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ERCC4Q92889 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
ERCC4Q92889 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.37■□□□□ 0.37
ERCC4Q92889 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.37■□□□□ 0.37
ERCC4Q92889 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC17.37■□□□□ 0.37
ERCC4Q92889 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
ERCC4Q92889 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.37■□□□□ 0.37
ERCC4Q92889 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.37■□□□□ 0.37
ERCC4Q92889 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.37■□□□□ 0.37
ERCC4Q92889 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.37■□□□□ 0.37
ERCC4Q92889 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.37■□□□□ 0.37
ERCC4Q92889 AC109322.1-201ENST00000524499 1264 ntBASIC17.37■□□□□ 0.37
ERCC4Q92889 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.37■□□□□ 0.37
ERCC4Q92889 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.37■□□□□ 0.37
ERCC4Q92889 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.37■□□□□ 0.37
ERCC4Q92889 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.37■□□□□ 0.37
ERCC4Q92889 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.37■□□□□ 0.37
ERCC4Q92889 AC025181.2-201ENST00000606994 802 ntBASIC17.37■□□□□ 0.37
ERCC4Q92889 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 AC104581.4-201ENST00000623126 3052 ntBASIC17.37■□□□□ 0.37
ERCC4Q92889 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
ERCC4Q92889 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
ERCC4Q92889 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ERCC4Q92889 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms