Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.69□□□□□ -0.22
CLRN1P58418 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.69□□□□□ -0.22
CLRN1P58418 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.69□□□□□ -0.22
CLRN1P58418 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CLRN1P58418 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
CLRN1P58418 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
CLRN1P58418 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC13.69□□□□□ -0.22
CLRN1P58418 AC004066.1-201ENST00000502488 802 ntBASIC13.69□□□□□ -0.22
CLRN1P58418 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC13.69□□□□□ -0.22
CLRN1P58418 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.69□□□□□ -0.22
CLRN1P58418 AC023310.3-201ENST00000557027 670 ntBASIC13.69□□□□□ -0.22
CLRN1P58418 AC100756.1-201ENST00000562736 682 ntBASIC13.69□□□□□ -0.22
CLRN1P58418 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC13.69□□□□□ -0.22
CLRN1P58418 AC138749.3-201ENST00000567691 622 ntBASIC13.69□□□□□ -0.22
CLRN1P58418 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
CLRN1P58418 AC116165.1-201ENST00000611806 668 ntBASIC13.69□□□□□ -0.22
CLRN1P58418 AC009118.2-201ENST00000613275 655 ntBASIC13.69□□□□□ -0.22
CLRN1P58418 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC13.69□□□□□ -0.22
CLRN1P58418 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CLRN1P58418 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
CLRN1P58418 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.69□□□□□ -0.22
CLRN1P58418 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.69□□□□□ -0.22
CLRN1P58418 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CLRN1P58418 AC011270.2-201ENST00000624293 2550 ntBASIC13.69□□□□□ -0.22
CLRN1P58418 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLRN1P58418 REXO1L4P-201ENST00000605109 1937 ntBASIC13.68□□□□□ -0.22
CLRN1P58418 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
CLRN1P58418 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
CLRN1P58418 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.68□□□□□ -0.22
CLRN1P58418 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 LINC00528-201ENST00000600723 2160 ntBASIC13.68□□□□□ -0.22
CLRN1P58418 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CLRN1P58418 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC13.68□□□□□ -0.22
CLRN1P58418 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 SUN1-204ENST00000403868 978 ntTSL 2 BASIC13.68□□□□□ -0.22
CLRN1P58418 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.68□□□□□ -0.22
CLRN1P58418 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC13.68□□□□□ -0.22
CLRN1P58418 RPL13AP25-201ENST00000484130 612 ntBASIC13.68□□□□□ -0.22
CLRN1P58418 AC104596.2-201ENST00000512793 793 ntBASIC13.68□□□□□ -0.22
CLRN1P58418 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC13.68□□□□□ -0.22
CLRN1P58418 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC13.68□□□□□ -0.22
CLRN1P58418 SAMD11P1-201ENST00000571429 661 ntBASIC13.68□□□□□ -0.22
CLRN1P58418 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC13.68□□□□□ -0.22
CLRN1P58418 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
CLRN1P58418 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CLRN1P58418 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC13.68□□□□□ -0.22
CLRN1P58418 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC13.68□□□□□ -0.22
CLRN1P58418 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CLRN1P58418 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CLRN1P58418 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.68□□□□□ -0.22
CLRN1P58418 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLRN1P58418 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CLRN1P58418 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC13.67□□□□□ -0.22
CLRN1P58418 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 AP000845.1-201ENST00000581677 2131 ntBASIC13.67□□□□□ -0.22
CLRN1P58418 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLRN1P58418 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms