Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.5□□□□□ -0.09
LIM2P55344 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.49□□□□□ -0.09
LIM2P55344 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.49□□□□□ -0.09
LIM2P55344 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.49□□□□□ -0.09
LIM2P55344 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.49□□□□□ -0.09
LIM2P55344 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
LIM2P55344 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.49□□□□□ -0.09
LIM2P55344 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
LIM2P55344 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.49□□□□□ -0.09
LIM2P55344 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.49□□□□□ -0.09
LIM2P55344 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
LIM2P55344 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 AL645937.2-201ENST00000396808 931 ntBASIC14.49□□□□□ -0.09
LIM2P55344 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.49□□□□□ -0.09
LIM2P55344 COX20P2-201ENST00000452636 358 ntBASIC14.49□□□□□ -0.09
LIM2P55344 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.49□□□□□ -0.09
LIM2P55344 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
LIM2P55344 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.49□□□□□ -0.09
LIM2P55344 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.49□□□□□ -0.09
LIM2P55344 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.49□□□□□ -0.09
LIM2P55344 AL596325.1-201ENST00000563991 1082 ntBASIC14.49□□□□□ -0.09
LIM2P55344 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.49□□□□□ -0.09
LIM2P55344 LINC02084-201ENST00000606069 1096 ntBASIC14.49□□□□□ -0.09
LIM2P55344 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.49□□□□□ -0.09
LIM2P55344 AC005252.2-201ENST00000624630 1141 ntBASIC14.49□□□□□ -0.09
LIM2P55344 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.49□□□□□ -0.09
LIM2P55344 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
LIM2P55344 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
LIM2P55344 AL390755.1-201ENST00000623716 2027 ntBASIC14.49□□□□□ -0.09
LIM2P55344 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.49□□□□□ -0.09
LIM2P55344 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
LIM2P55344 AC026748.1-201ENST00000624349 3251 ntBASIC14.49□□□□□ -0.09
LIM2P55344 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.49□□□□□ -0.09
LIM2P55344 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
LIM2P55344 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.49□□□□□ -0.09
LIM2P55344 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LIM2P55344 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.48□□□□□ -0.09
LIM2P55344 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
LIM2P55344 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.48□□□□□ -0.09
LIM2P55344 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
LIM2P55344 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.48□□□□□ -0.09
LIM2P55344 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
LIM2P55344 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.48□□□□□ -0.09
LIM2P55344 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.48□□□□□ -0.09
LIM2P55344 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
LIM2P55344 NUS1P3-201ENST00000423502 862 ntBASIC14.48□□□□□ -0.09
LIM2P55344 RN7SL752P-201ENST00000463779 287 ntBASIC14.48□□□□□ -0.09
LIM2P55344 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
LIM2P55344 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
LIM2P55344 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.48□□□□□ -0.09
LIM2P55344 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
LIM2P55344 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
LIM2P55344 CLUHP6-201ENST00000580789 941 ntBASIC14.48□□□□□ -0.09
LIM2P55344 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.48□□□□□ -0.09
LIM2P55344 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.48□□□□□ -0.09
LIM2P55344 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.48□□□□□ -0.09
LIM2P55344 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
LIM2P55344 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.48□□□□□ -0.09
LIM2P55344 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.48□□□□□ -0.09
LIM2P55344 AL358472.5-202ENST00000641448 1267 ntBASIC14.48□□□□□ -0.09
LIM2P55344 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
LIM2P55344 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LIM2P55344 ZBED1P1-201ENST00000502364 1930 ntBASIC14.48□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms