Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC073347.1-201ENST00000421633 2643 ntBASIC15.92■□□□□ 0.14
COL4A4P53420 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL4A4P53420 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.92■□□□□ 0.14
COL4A4P53420 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
COL4A4P53420 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL4A4P53420 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC15.92■□□□□ 0.14
COL4A4P53420 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL4A4P53420 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL4A4P53420 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
COL4A4P53420 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC15.92■□□□□ 0.14
COL4A4P53420 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
COL4A4P53420 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL4A4P53420 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC15.92■□□□□ 0.14
COL4A4P53420 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC15.92■□□□□ 0.14
COL4A4P53420 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
COL4A4P53420 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL4A4P53420 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL4A4P53420 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC15.92■□□□□ 0.14
COL4A4P53420 DNM1P30-201ENST00000563586 452 ntBASIC15.92■□□□□ 0.14
COL4A4P53420 AC012508.2-201ENST00000567613 1472 ntBASIC15.92■□□□□ 0.14
COL4A4P53420 MIR4522-201ENST00000584932 87 ntBASIC15.92■□□□□ 0.14
COL4A4P53420 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.91■□□□□ 0.14
COL4A4P53420 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.91■□□□□ 0.14
COL4A4P53420 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A4P53420 AC023157.3-201ENST00000619086 2088 ntBASIC15.91■□□□□ 0.14
COL4A4P53420 AL157414.3-201ENST00000624276 1954 ntBASIC15.91■□□□□ 0.14
COL4A4P53420 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
COL4A4P53420 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
COL4A4P53420 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A4P53420 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.91■□□□□ 0.14
COL4A4P53420 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A4P53420 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A4P53420 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
COL4A4P53420 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
COL4A4P53420 AL162727.3-201ENST00000635661 2787 ntBASIC15.91■□□□□ 0.14
COL4A4P53420 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A4P53420 FRMPD2B-201ENST00000431305 1347 ntBASIC15.91■□□□□ 0.14
COL4A4P53420 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A4P53420 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A4P53420 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
COL4A4P53420 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.91■□□□□ 0.14
COL4A4P53420 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.91■□□□□ 0.14
COL4A4P53420 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC15.91■□□□□ 0.14
COL4A4P53420 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC15.91■□□□□ 0.14
COL4A4P53420 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A4P53420 MIR5196-201ENST00000578146 115 ntBASIC15.91■□□□□ 0.14
COL4A4P53420 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A4P53420 CMC2-224ENST00000630396 481 ntTSL 5 BASIC15.91■□□□□ 0.14
COL4A4P53420 REXO1L2P-201ENST00000425429 2069 ntBASIC15.91■□□□□ 0.14
COL4A4P53420 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A4P53420 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A4P53420 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A4P53420 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A4P53420 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
COL4A4P53420 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.9■□□□□ 0.14
COL4A4P53420 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 WASH3P-207ENST00000560956 1394 ntBASIC15.9■□□□□ 0.14
COL4A4P53420 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 PRAL-201ENST00000624952 3286 ntBASIC15.9■□□□□ 0.14
COL4A4P53420 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
COL4A4P53420 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.9■□□□□ 0.14
COL4A4P53420 AL583805.1-201ENST00000391389 531 ntBASIC15.9■□□□□ 0.14
COL4A4P53420 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC15.9■□□□□ 0.14
COL4A4P53420 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC15.9■□□□□ 0.14
COL4A4P53420 AC018463.1-201ENST00000456674 917 ntBASIC15.9■□□□□ 0.14
COL4A4P53420 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
COL4A4P53420 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.9■□□□□ 0.14
COL4A4P53420 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC15.9■□□□□ 0.14
COL4A4P53420 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC15.9■□□□□ 0.14
COL4A4P53420 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC15.9■□□□□ 0.14
COL4A4P53420 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.9■□□□□ 0.14
COL4A4P53420 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
COL4A4P53420 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
COL4A4P53420 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
COL4A4P53420 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.9■□□□□ 0.14
COL4A4P53420 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
COL4A4P53420 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.9■□□□□ 0.14
COL4A4P53420 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC15.9■□□□□ 0.14
COL4A4P53420 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A4P53420 FAM90A2P-201ENST00000511144 1395 ntBASIC15.9■□□□□ 0.14
COL4A4P53420 FAM90A25P-201ENST00000528404 1395 ntBASIC15.9■□□□□ 0.14
COL4A4P53420 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
COL4A4P53420 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A4P53420 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A4P53420 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC15.89■□□□□ 0.13
COL4A4P53420 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC15.89■□□□□ 0.13
COL4A4P53420 RPL7P35-201ENST00000446943 740 ntBASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms