Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
NEK3P51956 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.79■□□□□ 0.12
NEK3P51956 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.79■□□□□ 0.12
NEK3P51956 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.79■□□□□ 0.12
NEK3P51956 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.12
NEK3P51956 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
NEK3P51956 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.79■□□□□ 0.12
NEK3P51956 AL442647.2-201ENST00000429864 857 ntBASIC15.79■□□□□ 0.12
NEK3P51956 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.79■□□□□ 0.12
NEK3P51956 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.79■□□□□ 0.12
NEK3P51956 GALT-202ENST00000450095 1280 ntTSL 2 BASIC15.79■□□□□ 0.12
NEK3P51956 KRT18P43-201ENST00000469825 1281 ntBASIC15.79■□□□□ 0.12
NEK3P51956 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.79■□□□□ 0.12
NEK3P51956 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.79■□□□□ 0.12
NEK3P51956 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.79■□□□□ 0.12
NEK3P51956 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.79■□□□□ 0.12
NEK3P51956 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.79■□□□□ 0.12
NEK3P51956 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.79■□□□□ 0.12
NEK3P51956 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.79■□□□□ 0.12
NEK3P51956 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
NEK3P51956 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.79■□□□□ 0.12
NEK3P51956 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
NEK3P51956 AC005912.2-201ENST00000619492 2400 ntBASIC15.79■□□□□ 0.12
NEK3P51956 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
NEK3P51956 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.79■□□□□ 0.12
NEK3P51956 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.79■□□□□ 0.12
NEK3P51956 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
NEK3P51956 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 ZBED1P1-201ENST00000502364 1930 ntBASIC15.78■□□□□ 0.12
NEK3P51956 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.78■□□□□ 0.12
NEK3P51956 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
NEK3P51956 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.78■□□□□ 0.12
NEK3P51956 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 CICP14-201ENST00000629111 2732 ntBASIC15.78■□□□□ 0.12
NEK3P51956 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
NEK3P51956 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.78■□□□□ 0.12
NEK3P51956 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.78■□□□□ 0.12
NEK3P51956 RN7SL837P-201ENST00000463010 287 ntBASIC15.78■□□□□ 0.12
NEK3P51956 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.78■□□□□ 0.12
NEK3P51956 PUDP-206ENST00000540122 825 ntTSL 2 BASIC15.78■□□□□ 0.12
NEK3P51956 AC132938.2-201ENST00000579188 680 ntBASIC15.78■□□□□ 0.12
NEK3P51956 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.78■□□□□ 0.12
NEK3P51956 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.78■□□□□ 0.12
NEK3P51956 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
NEK3P51956 AL591163.1-201ENST00000641757 987 ntBASIC15.78■□□□□ 0.12
NEK3P51956 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.78■□□□□ 0.12
NEK3P51956 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.78■□□□□ 0.12
NEK3P51956 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.78■□□□□ 0.12
NEK3P51956 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
NEK3P51956 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
NEK3P51956 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NEK3P51956 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms