Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
PTPN9P43378 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
PTPN9P43378 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.83■□□□□ 0.12
PTPN9P43378 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
PTPN9P43378 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
PTPN9P43378 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 AC012441.1-201ENST00000446669 685 ntBASIC15.83■□□□□ 0.12
PTPN9P43378 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.83■□□□□ 0.12
PTPN9P43378 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.83■□□□□ 0.12
PTPN9P43378 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.83■□□□□ 0.12
PTPN9P43378 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
PTPN9P43378 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
PTPN9P43378 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
PTPN9P43378 MIR5189-201ENST00000577370 114 ntBASIC15.83■□□□□ 0.12
PTPN9P43378 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.83■□□□□ 0.12
PTPN9P43378 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.83■□□□□ 0.12
PTPN9P43378 AC010319.3-201ENST00000597028 470 ntBASIC15.83■□□□□ 0.12
PTPN9P43378 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 KRT8P35-201ENST00000483942 1338 ntBASIC15.83■□□□□ 0.12
PTPN9P43378 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.83■□□□□ 0.12
PTPN9P43378 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.83■□□□□ 0.12
PTPN9P43378 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.83■□□□□ 0.12
PTPN9P43378 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.83■□□□□ 0.12
PTPN9P43378 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTPN9P43378 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
PTPN9P43378 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.82■□□□□ 0.12
PTPN9P43378 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
PTPN9P43378 AC023090.2-201ENST00000625182 2110 ntBASIC15.82■□□□□ 0.12
PTPN9P43378 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 RN7SL752P-201ENST00000463779 287 ntBASIC15.82■□□□□ 0.12
PTPN9P43378 RN7SL692P-201ENST00000464677 288 ntBASIC15.82■□□□□ 0.12
PTPN9P43378 AC011495.1-201ENST00000498085 584 ntBASIC15.82■□□□□ 0.12
PTPN9P43378 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
PTPN9P43378 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.82■□□□□ 0.12
PTPN9P43378 AL596325.1-201ENST00000563991 1082 ntBASIC15.82■□□□□ 0.12
PTPN9P43378 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
PTPN9P43378 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
PTPN9P43378 AL358472.5-202ENST00000641448 1267 ntBASIC15.82■□□□□ 0.12
PTPN9P43378 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
PTPN9P43378 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.82■□□□□ 0.12
PTPN9P43378 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.82■□□□□ 0.12
PTPN9P43378 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
PTPN9P43378 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 LRRC59-203ENST00000576448 1531 ntBASIC15.82■□□□□ 0.12
PTPN9P43378 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.82■□□□□ 0.12
PTPN9P43378 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.82■□□□□ 0.12
PTPN9P43378 AC068587.6-202ENST00000641839 5619 ntBASIC15.82■□□□□ 0.12
PTPN9P43378 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.82■□□□□ 0.12
PTPN9P43378 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PTPN9P43378 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PTPN9P43378 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.81■□□□□ 0.12
PTPN9P43378 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.81■□□□□ 0.12
PTPN9P43378 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
PTPN9P43378 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.81■□□□□ 0.12
PTPN9P43378 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PTPN9P43378 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PTPN9P43378 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PTPN9P43378 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PTPN9P43378 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms