Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC087392.5-201ENST00000612517 489 ntBASIC24.81■■□□□ 1.56
CUX1P39880 MVK-217ENST00000639206 367 ntTSL 5 BASIC24.81■■□□□ 1.56
CUX1P39880 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
CUX1P39880 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CUX1P39880 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CUX1P39880 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CUX1P39880 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC24.8■■□□□ 1.56
CUX1P39880 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CUX1P39880 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CUX1P39880 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CUX1P39880 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
CUX1P39880 WARS-232ENST00000556645 2508 ntTSL 5 BASIC24.8■■□□□ 1.56
CUX1P39880 AL592076.1-201ENST00000424448 303 ntBASIC24.8■■□□□ 1.56
CUX1P39880 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CUX1P39880 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
CUX1P39880 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC24.8■■□□□ 1.56
CUX1P39880 AL022344.2-201ENST00000568976 968 ntBASIC24.8■■□□□ 1.56
CUX1P39880 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC24.8■■□□□ 1.56
CUX1P39880 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC24.8■■□□□ 1.56
CUX1P39880 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC24.8■■□□□ 1.56
CUX1P39880 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CUX1P39880 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
CUX1P39880 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
CUX1P39880 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC24.8■■□□□ 1.56
CUX1P39880 R3HDM2P2-201ENST00000401880 2116 ntBASIC24.8■■□□□ 1.56
CUX1P39880 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
CUX1P39880 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CUX1P39880 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CUX1P39880 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC24.79■■□□□ 1.56
CUX1P39880 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
CUX1P39880 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 JTB-202ENST00000356648 1040 ntTSL 2 BASIC24.79■■□□□ 1.56
CUX1P39880 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 AL139008.1-201ENST00000437894 228 ntBASIC24.79■■□□□ 1.56
CUX1P39880 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC24.79■■□□□ 1.56
CUX1P39880 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC24.79■■□□□ 1.56
CUX1P39880 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC24.79■■□□□ 1.56
CUX1P39880 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC24.79■■□□□ 1.56
CUX1P39880 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC24.79■■□□□ 1.56
CUX1P39880 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC24.79■■□□□ 1.56
CUX1P39880 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC24.79■■□□□ 1.56
CUX1P39880 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC24.79■■□□□ 1.56
CUX1P39880 MARK2P16-201ENST00000605714 1723 ntBASIC24.79■■□□□ 1.56
CUX1P39880 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
CUX1P39880 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC24.79■■□□□ 1.56
CUX1P39880 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC24.79■■□□□ 1.56
CUX1P39880 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC24.78■■□□□ 1.56
CUX1P39880 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CUX1P39880 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC24.78■■□□□ 1.56
CUX1P39880 LINC01815-202ENST00000641468 1409 ntBASIC24.78■■□□□ 1.56
CUX1P39880 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
CUX1P39880 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CUX1P39880 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CUX1P39880 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
CUX1P39880 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
CUX1P39880 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CUX1P39880 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC24.78■■□□□ 1.56
CUX1P39880 AL157792.1-201ENST00000488281 530 ntBASIC24.78■■□□□ 1.56
CUX1P39880 LINC00634-202ENST00000505157 222 ntBASIC24.78■■□□□ 1.56
CUX1P39880 CD164-210ENST00000512821 964 ntTSL 2 BASIC24.78■■□□□ 1.56
CUX1P39880 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CUX1P39880 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC24.78■■□□□ 1.56
CUX1P39880 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
CUX1P39880 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CUX1P39880 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC24.78■■□□□ 1.56
CUX1P39880 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CUX1P39880 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CUX1P39880 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC24.78■■□□□ 1.56
CUX1P39880 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CUX1P39880 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CUX1P39880 AC020658.6-201ENST00000623564 1870 ntBASIC24.78■■□□□ 1.56
CUX1P39880 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC24.78■■□□□ 1.56
CUX1P39880 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
CUX1P39880 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
CUX1P39880 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CUX1P39880 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC24.77■■□□□ 1.56
CUX1P39880 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC24.77■■□□□ 1.56
CUX1P39880 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC24.77■■□□□ 1.56
CUX1P39880 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC24.77■■□□□ 1.56
CUX1P39880 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC24.77■■□□□ 1.56
CUX1P39880 RHEB-207ENST00000496004 744 ntTSL 2 BASIC24.77■■□□□ 1.56
CUX1P39880 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC24.77■■□□□ 1.56
CUX1P39880 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC24.77■■□□□ 1.56
CUX1P39880 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC24.77■■□□□ 1.56
CUX1P39880 AC007952.4-201ENST00000573866 637 ntBASIC24.77■■□□□ 1.56
CUX1P39880 MIR3180-2-201ENST00000581748 88 ntBASIC24.77■■□□□ 1.56
CUX1P39880 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC24.77■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms