Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC19.51■□□□□ 0.71
COL18A1P39060 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC19.51■□□□□ 0.71
COL18A1P39060 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC19.51■□□□□ 0.71
COL18A1P39060 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL18A1P39060 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL18A1P39060 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC19.51■□□□□ 0.71
COL18A1P39060 MIR3180-2-201ENST00000581748 88 ntBASIC19.51■□□□□ 0.71
COL18A1P39060 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC19.51■□□□□ 0.71
COL18A1P39060 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC19.51■□□□□ 0.71
COL18A1P39060 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL18A1P39060 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC19.51■□□□□ 0.71
COL18A1P39060 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC19.51■□□□□ 0.71
COL18A1P39060 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL18A1P39060 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC19.5■□□□□ 0.71
COL18A1P39060 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC19.5■□□□□ 0.71
COL18A1P39060 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC19.5■□□□□ 0.71
COL18A1P39060 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC19.5■□□□□ 0.71
COL18A1P39060 LINC00634-202ENST00000505157 222 ntBASIC19.5■□□□□ 0.71
COL18A1P39060 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC19.5■□□□□ 0.71
COL18A1P39060 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
COL18A1P39060 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC19.5■□□□□ 0.71
COL18A1P39060 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC19.5■□□□□ 0.71
COL18A1P39060 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC19.5■□□□□ 0.71
COL18A1P39060 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
COL18A1P39060 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
COL18A1P39060 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
COL18A1P39060 F10-203ENST00000409306 1450 ntTSL 3 BASIC19.5■□□□□ 0.71
COL18A1P39060 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC19.5■□□□□ 0.71
COL18A1P39060 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
COL18A1P39060 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL18A1P39060 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC19.5■□□□□ 0.71
COL18A1P39060 HLA-DMA-203ENST00000395305 777 ntBASIC19.49■□□□□ 0.71
COL18A1P39060 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC19.49■□□□□ 0.71
COL18A1P39060 AC004837.1-201ENST00000446267 564 ntBASIC19.49■□□□□ 0.71
COL18A1P39060 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC19.49■□□□□ 0.71
COL18A1P39060 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC19.49■□□□□ 0.71
COL18A1P39060 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC19.49■□□□□ 0.71
COL18A1P39060 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL18A1P39060 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC19.49■□□□□ 0.71
COL18A1P39060 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
COL18A1P39060 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL18A1P39060 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC19.49■□□□□ 0.71
COL18A1P39060 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.49■□□□□ 0.71
COL18A1P39060 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL18A1P39060 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL18A1P39060 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC19.49■□□□□ 0.71
COL18A1P39060 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC19.49■□□□□ 0.71
COL18A1P39060 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.49■□□□□ 0.71
COL18A1P39060 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.49■□□□□ 0.71
COL18A1P39060 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL18A1P39060 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC19.49■□□□□ 0.71
COL18A1P39060 PCDHGB8P-201ENST00000502926 1973 ntBASIC19.49■□□□□ 0.71
COL18A1P39060 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
COL18A1P39060 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.49■□□□□ 0.71
COL18A1P39060 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL18A1P39060 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC19.49■□□□□ 0.71
COL18A1P39060 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC19.49■□□□□ 0.71
COL18A1P39060 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC19.49■□□□□ 0.71
COL18A1P39060 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC19.49■□□□□ 0.71
COL18A1P39060 NAMA-206ENST00000605377 509 ntTSL 5 BASIC19.49■□□□□ 0.71
COL18A1P39060 AC138466.5-201ENST00000624002 808 ntBASIC19.49■□□□□ 0.71
COL18A1P39060 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL18A1P39060 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.49■□□□□ 0.71
COL18A1P39060 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL18A1P39060 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL18A1P39060 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC19.49■□□□□ 0.71
COL18A1P39060 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC19.49■□□□□ 0.71
COL18A1P39060 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL18A1P39060 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL18A1P39060 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC19.48■□□□□ 0.71
COL18A1P39060 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC19.48■□□□□ 0.71
COL18A1P39060 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC19.48■□□□□ 0.71
COL18A1P39060 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.48■□□□□ 0.71
COL18A1P39060 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL18A1P39060 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL18A1P39060 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL18A1P39060 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL18A1P39060 BUD31-205ENST00000456893 512 ntTSL 5 BASIC19.48■□□□□ 0.71
COL18A1P39060 AC010234.1-201ENST00000494599 870 ntBASIC19.48■□□□□ 0.71
COL18A1P39060 ALG1L6P-201ENST00000515248 758 ntBASIC19.48■□□□□ 0.71
COL18A1P39060 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
COL18A1P39060 MT3-203ENST00000565838 421 ntTSL 3 BASIC19.48■□□□□ 0.71
COL18A1P39060 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms