Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SNX1-214ENST00000625244 324 ntTSL 5 BASIC19.93■□□□□ 0.78
HOXC9P31274 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
HOXC9P31274 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC19.93■□□□□ 0.78
HOXC9P31274 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC9P31274 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
HOXC9P31274 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC19.92■□□□□ 0.78
HOXC9P31274 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC9P31274 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC9P31274 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC19.92■□□□□ 0.78
HOXC9P31274 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC9P31274 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC9P31274 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC9P31274 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC9P31274 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC9P31274 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
HOXC9P31274 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC9P31274 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC9P31274 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
HOXC9P31274 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC19.92■□□□□ 0.78
HOXC9P31274 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC19.92■□□□□ 0.78
HOXC9P31274 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC19.92■□□□□ 0.78
HOXC9P31274 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC19.92■□□□□ 0.78
HOXC9P31274 AC006335.1-201ENST00000445200 547 ntBASIC19.92■□□□□ 0.78
HOXC9P31274 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC19.92■□□□□ 0.78
HOXC9P31274 MPRIPP1-201ENST00000452433 1089 ntBASIC19.92■□□□□ 0.78
HOXC9P31274 CICP12-201ENST00000455801 843 ntBASIC19.92■□□□□ 0.78
HOXC9P31274 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC19.92■□□□□ 0.78
HOXC9P31274 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC9P31274 BX088702.1-201ENST00000610784 235 ntBASIC19.92■□□□□ 0.78
HOXC9P31274 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC19.92■□□□□ 0.78
HOXC9P31274 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC19.92■□□□□ 0.78
HOXC9P31274 AC136759.1-202ENST00000530858 2194 ntBASIC19.92■□□□□ 0.78
HOXC9P31274 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC9P31274 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC9P31274 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC9P31274 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC9P31274 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
HOXC9P31274 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
HOXC9P31274 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC19.91■□□□□ 0.78
HOXC9P31274 MROH4P-201ENST00000431302 1578 ntBASIC19.91■□□□□ 0.78
HOXC9P31274 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC19.91■□□□□ 0.78
HOXC9P31274 MVK-214ENST00000629016 1591 ntTSL 5 BASIC19.91■□□□□ 0.78
HOXC9P31274 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC19.91■□□□□ 0.78
HOXC9P31274 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
HOXC9P31274 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC19.91■□□□□ 0.78
HOXC9P31274 AC234782.1-201ENST00000451950 919 ntBASIC19.91■□□□□ 0.78
HOXC9P31274 CEP164P1-201ENST00000455142 418 ntBASIC19.91■□□□□ 0.78
HOXC9P31274 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC19.91■□□□□ 0.78
HOXC9P31274 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC19.91■□□□□ 0.78
HOXC9P31274 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC19.91■□□□□ 0.78
HOXC9P31274 MIR6720-201ENST00000611664 98 ntBASIC19.91■□□□□ 0.78
HOXC9P31274 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
HOXC9P31274 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC19.91■□□□□ 0.78
HOXC9P31274 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC19.91■□□□□ 0.78
HOXC9P31274 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
HOXC9P31274 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
HOXC9P31274 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC9P31274 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
HOXC9P31274 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC9P31274 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC9P31274 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
HOXC9P31274 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC9P31274 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC9P31274 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC9P31274 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC19.9■□□□□ 0.78
HOXC9P31274 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC9P31274 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC19.9■□□□□ 0.78
HOXC9P31274 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
HOXC9P31274 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC9P31274 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC9P31274 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC19.9■□□□□ 0.78
HOXC9P31274 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC19.9■□□□□ 0.78
HOXC9P31274 FTLP1-201ENST00000449155 526 ntBASIC19.9■□□□□ 0.78
HOXC9P31274 AC073150.1-201ENST00000450406 1084 ntBASIC19.9■□□□□ 0.78
HOXC9P31274 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms