Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 CYMP-203ENST00000474680 1263 ntBASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 RNA5SP421-201ENST00000516864 134 ntBASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 AC023310.3-201ENST00000557027 670 ntBASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 AC100756.1-201ENST00000562736 682 ntBASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 RRP7BP-205ENST00000566851 833 ntBASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 AC138749.3-201ENST00000567691 622 ntBASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 AC116165.1-201ENST00000611806 668 ntBASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 AC004790.1-201ENST00000612686 536 ntBASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 AL009178.2-201ENST00000597278 2719 ntBASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.55■□□□□ 0.08
LRRC40Q9H9A6 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 AC097376.2-205ENST00000610159 5334 ntBASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 AC007686.3-201ENST00000619017 3487 ntBASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 DRD5P1-201ENST00000456605 1438 ntBASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 AL359258.3-201ENST00000622910 2331 ntBASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 SPDYE19P-201ENST00000338590 713 ntBASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 RN7SL399P-201ENST00000471648 279 ntBASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 RPL13AP25-201ENST00000484130 612 ntBASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 AC026410.3-201ENST00000514280 936 ntBASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 AL049840.4-201ENST00000602422 811 ntBASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 CICP14-201ENST00000629111 2732 ntBASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 LINC00552-201ENST00000625151 2579 ntBASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRRC40Q9H9A6 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRRC40Q9H9A6 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.53■□□□□ 0.08
LRRC40Q9H9A6 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.53■□□□□ 0.08
LRRC40Q9H9A6 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.53■□□□□ 0.08
LRRC40Q9H9A6 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
LRRC40Q9H9A6 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.53■□□□□ 0.08
LRRC40Q9H9A6 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRRC40Q9H9A6 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRRC40Q9H9A6 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LRRC40Q9H9A6 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
LRRC40Q9H9A6 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRRC40Q9H9A6 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.53■□□□□ 0.08
LRRC40Q9H9A6 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms