Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC006122.1-201ENST00000493323 440 ntBASIC15.08■□□□□ 0
TTC28Q96AY4 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC15.08■□□□□ 0
TTC28Q96AY4 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC15.08■□□□□ 0
TTC28Q96AY4 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC15.08■□□□□ 0
TTC28Q96AY4 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC15.08■□□□□ 0
TTC28Q96AY4 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.08■□□□□ 0
TTC28Q96AY4 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC15.08■□□□□ 0
TTC28Q96AY4 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TTC28Q96AY4 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.08■□□□□ 0
TTC28Q96AY4 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.08■□□□□ 0
TTC28Q96AY4 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TTC28Q96AY4 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
TTC28Q96AY4 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.08■□□□□ 0
TTC28Q96AY4 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.08■□□□□ 0
TTC28Q96AY4 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TTC28Q96AY4 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TTC28Q96AY4 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TTC28Q96AY4 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.07■□□□□ 0
TTC28Q96AY4 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.07■□□□□ 0
TTC28Q96AY4 AC018638.5-201ENST00000450885 754 ntBASIC15.07■□□□□ 0
TTC28Q96AY4 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC15.07■□□□□ 0
TTC28Q96AY4 AP000920.1-201ENST00000531824 344 ntBASIC15.07■□□□□ 0
TTC28Q96AY4 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC15.07■□□□□ 0
TTC28Q96AY4 RN7SL440P-201ENST00000577855 343 ntBASIC15.07■□□□□ 0
TTC28Q96AY4 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC15.07■□□□□ 0
TTC28Q96AY4 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.07■□□□□ 0
TTC28Q96AY4 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
TTC28Q96AY4 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.07■□□□□ 0
TTC28Q96AY4 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC15.07■□□□□ 0
TTC28Q96AY4 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC15.07■□□□□ 0
TTC28Q96AY4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC15.07■□□□□ 0
TTC28Q96AY4 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
TTC28Q96AY4 FAM86FP-201ENST00000338711 969 ntBASIC15.07■□□□□ 0
TTC28Q96AY4 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.07■□□□□ 0
TTC28Q96AY4 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC15.07■□□□□ 0
TTC28Q96AY4 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC15.07■□□□□ 0
TTC28Q96AY4 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC15.07■□□□□ 0
TTC28Q96AY4 AL773545.2-201ENST00000442149 472 ntBASIC15.07■□□□□ 0
TTC28Q96AY4 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC15.07■□□□□ 0
TTC28Q96AY4 RN7SL69P-201ENST00000468423 272 ntBASIC15.07■□□□□ 0
TTC28Q96AY4 RN7SL147P-201ENST00000487345 298 ntBASIC15.07■□□□□ 0
TTC28Q96AY4 AC022447.5-201ENST00000504817 392 ntBASIC15.07■□□□□ 0
TTC28Q96AY4 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC15.07■□□□□ 0
TTC28Q96AY4 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.07■□□□□ 0
TTC28Q96AY4 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC15.07■□□□□ 0
TTC28Q96AY4 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC15.07■□□□□ 0
TTC28Q96AY4 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.07■□□□□ 0
TTC28Q96AY4 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.07■□□□□ 0
TTC28Q96AY4 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.07■□□□□ 0
TTC28Q96AY4 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 AL157414.3-201ENST00000624276 1954 ntBASIC15.07■□□□□ 0
TTC28Q96AY4 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TTC28Q96AY4 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.06■□□□□ 0
TTC28Q96AY4 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC15.06■□□□□ 0
TTC28Q96AY4 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
TTC28Q96AY4 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.06■□□□□ 0
TTC28Q96AY4 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TTC28Q96AY4 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
TTC28Q96AY4 RNVU1-8-201ENST00000364272 125 ntBASIC15.06■□□□□ 0
TTC28Q96AY4 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC15.06■□□□□ 0
TTC28Q96AY4 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC15.06■□□□□ 0
TTC28Q96AY4 STK24P1-201ENST00000455035 1291 ntBASIC15.06■□□□□ 0
TTC28Q96AY4 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC15.06■□□□□ 0
TTC28Q96AY4 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC15.06■□□□□ 0
TTC28Q96AY4 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.06■□□□□ 0
TTC28Q96AY4 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC15.06■□□□□ 0
TTC28Q96AY4 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC15.06■□□□□ 0
TTC28Q96AY4 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC15.06■□□□□ 0
TTC28Q96AY4 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
TTC28Q96AY4 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
TTC28Q96AY4 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TTC28Q96AY4 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
TTC28Q96AY4 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.06■□□□□ 0
TTC28Q96AY4 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.06■□□□□ 0
TTC28Q96AY4 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
TTC28Q96AY4 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.06■□□□□ 0
TTC28Q96AY4 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC15.06■□□□□ 0
TTC28Q96AY4 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
TTC28Q96AY4 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC15.06■□□□□ 0
TTC28Q96AY4 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
TTC28Q96AY4 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC15.06■□□□□ 0
TTC28Q96AY4 HMGA1P2-201ENST00000430198 324 ntBASIC15.06■□□□□ 0
TTC28Q96AY4 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC15.06■□□□□ 0
TTC28Q96AY4 RN7SL288P-201ENST00000490496 291 ntBASIC15.06■□□□□ 0
TTC28Q96AY4 AC079414.2-201ENST00000567157 1104 ntBASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms