Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
NUP54Q7Z3B4 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NUP54Q7Z3B4 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 AC103702.1-201ENST00000548801 2630 ntBASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 AC138969.2-201ENST00000532739 9932 ntBASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 ACKR1-201ENST00000368121 1240 ntBASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 AL645937.2-201ENST00000396808 931 ntBASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 AC104457.1-201ENST00000401024 814 ntBASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 COX5BP8-201ENST00000416911 349 ntBASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 SAMD11P1-201ENST00000571429 661 ntBASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms