Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RPL8P2-201ENST00000430538 502 ntBASIC19.73■□□□□ 0.75
USP54Q70EL1 AL512306.1-201ENST00000432698 848 ntBASIC19.73■□□□□ 0.75
USP54Q70EL1 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC19.73■□□□□ 0.75
USP54Q70EL1 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC19.73■□□□□ 0.75
USP54Q70EL1 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC19.73■□□□□ 0.75
USP54Q70EL1 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP54Q70EL1 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC19.73■□□□□ 0.75
USP54Q70EL1 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.73■□□□□ 0.75
USP54Q70EL1 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
USP54Q70EL1 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
USP54Q70EL1 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
USP54Q70EL1 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP54Q70EL1 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
USP54Q70EL1 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP54Q70EL1 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP54Q70EL1 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC19.72■□□□□ 0.75
USP54Q70EL1 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP54Q70EL1 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
USP54Q70EL1 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP54Q70EL1 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC19.72■□□□□ 0.75
USP54Q70EL1 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC19.72■□□□□ 0.75
USP54Q70EL1 CHCHD2P9-201ENST00000461726 456 ntBASIC19.72■□□□□ 0.75
USP54Q70EL1 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC19.72■□□□□ 0.75
USP54Q70EL1 AC008723.1-201ENST00000506922 207 ntBASIC19.72■□□□□ 0.75
USP54Q70EL1 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC19.72■□□□□ 0.75
USP54Q70EL1 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP54Q70EL1 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC19.72■□□□□ 0.75
USP54Q70EL1 DRG2-220ENST00000583355 891 ntTSL 3 BASIC19.72■□□□□ 0.75
USP54Q70EL1 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP54Q70EL1 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
USP54Q70EL1 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
USP54Q70EL1 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP54Q70EL1 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP54Q70EL1 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP54Q70EL1 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC19.72■□□□□ 0.75
USP54Q70EL1 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
USP54Q70EL1 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP54Q70EL1 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP54Q70EL1 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC19.72■□□□□ 0.75
USP54Q70EL1 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC19.72■□□□□ 0.75
USP54Q70EL1 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP54Q70EL1 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC19.72■□□□□ 0.75
USP54Q70EL1 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
USP54Q70EL1 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
USP54Q70EL1 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
USP54Q70EL1 PFN2-206ENST00000461930 606 ntTSL 4 BASIC19.71■□□□□ 0.75
USP54Q70EL1 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC19.71■□□□□ 0.75
USP54Q70EL1 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC19.71■□□□□ 0.75
USP54Q70EL1 AL031713.1-201ENST00000564813 661 ntBASIC19.71■□□□□ 0.75
USP54Q70EL1 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.71■□□□□ 0.75
USP54Q70EL1 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP54Q70EL1 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP54Q70EL1 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP54Q70EL1 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
USP54Q70EL1 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP54Q70EL1 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP54Q70EL1 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP54Q70EL1 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
USP54Q70EL1 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
USP54Q70EL1 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP54Q70EL1 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP54Q70EL1 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP54Q70EL1 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC19.71■□□□□ 0.75
USP54Q70EL1 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP54Q70EL1 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP54Q70EL1 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
USP54Q70EL1 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP54Q70EL1 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC19.71■□□□□ 0.75
USP54Q70EL1 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC19.71■□□□□ 0.75
USP54Q70EL1 AC114947.1-202ENST00000514136 344 ntBASIC19.71■□□□□ 0.75
USP54Q70EL1 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP54Q70EL1 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC19.71■□□□□ 0.75
USP54Q70EL1 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
USP54Q70EL1 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.71■□□□□ 0.75
USP54Q70EL1 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC19.71■□□□□ 0.75
USP54Q70EL1 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP54Q70EL1 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC19.71■□□□□ 0.75
USP54Q70EL1 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP54Q70EL1 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP54Q70EL1 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
USP54Q70EL1 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC19.7■□□□□ 0.74
USP54Q70EL1 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.7■□□□□ 0.74
USP54Q70EL1 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP54Q70EL1 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
USP54Q70EL1 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP54Q70EL1 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP54Q70EL1 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC19.7■□□□□ 0.74
USP54Q70EL1 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP54Q70EL1 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP54Q70EL1 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC19.7■□□□□ 0.74
USP54Q70EL1 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP54Q70EL1 AC135983.4-201ENST00000564116 1262 ntBASIC19.7■□□□□ 0.74
USP54Q70EL1 AC005041.3-201ENST00000606287 649 ntBASIC19.7■□□□□ 0.74
USP54Q70EL1 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
USP54Q70EL1 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC19.7■□□□□ 0.74
USP54Q70EL1 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP54Q70EL1 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USP54Q70EL1 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP54Q70EL1 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP54Q70EL1 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms