Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 FO681548.1-201ENST00000455617 1132 ntBASIC18.14■□□□□ 0.49
CTR9Q6PD62 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTR9Q6PD62 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC18.14■□□□□ 0.49
CTR9Q6PD62 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CTR9Q6PD62 AC078819.1-201ENST00000547454 765 ntBASIC18.14■□□□□ 0.49
CTR9Q6PD62 AC012085.1-201ENST00000548270 765 ntBASIC18.14■□□□□ 0.49
CTR9Q6PD62 LARP4-220ENST00000615080 856 ntTSL 5 BASIC18.14■□□□□ 0.49
CTR9Q6PD62 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTR9Q6PD62 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CTR9Q6PD62 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CTR9Q6PD62 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CTR9Q6PD62 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CTR9Q6PD62 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTR9Q6PD62 AL360270.3-201ENST00000609118 1348 ntBASIC18.14■□□□□ 0.49
CTR9Q6PD62 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.14■□□□□ 0.49
CTR9Q6PD62 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC18.14■□□□□ 0.49
CTR9Q6PD62 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CTR9Q6PD62 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.14■□□□□ 0.49
CTR9Q6PD62 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC18.14■□□□□ 0.49
CTR9Q6PD62 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
CTR9Q6PD62 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 LRRC59-203ENST00000576448 1531 ntBASIC18.13■□□□□ 0.49
CTR9Q6PD62 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC18.13■□□□□ 0.49
CTR9Q6PD62 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CTR9Q6PD62 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC18.13■□□□□ 0.49
CTR9Q6PD62 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CTR9Q6PD62 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC18.13■□□□□ 0.49
CTR9Q6PD62 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC18.13■□□□□ 0.49
CTR9Q6PD62 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC18.13■□□□□ 0.49
CTR9Q6PD62 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.13■□□□□ 0.49
CTR9Q6PD62 RHOXF1P1-202ENST00000635473 501 ntBASIC18.13■□□□□ 0.49
CTR9Q6PD62 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC18.13■□□□□ 0.49
CTR9Q6PD62 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC18.13■□□□□ 0.49
CTR9Q6PD62 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CTR9Q6PD62 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CTR9Q6PD62 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC18.13■□□□□ 0.49
CTR9Q6PD62 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CTR9Q6PD62 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CTR9Q6PD62 PPT1-215ENST00000641471 2368 ntBASIC18.12■□□□□ 0.49
CTR9Q6PD62 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 AC023024.2-201ENST00000623561 1993 ntBASIC18.12■□□□□ 0.49
CTR9Q6PD62 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 AC006001.1-201ENST00000325130 474 ntBASIC18.12■□□□□ 0.49
CTR9Q6PD62 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 AL590640.2-201ENST00000457038 527 ntBASIC18.12■□□□□ 0.49
CTR9Q6PD62 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CTR9Q6PD62 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CTR9Q6PD62 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms