Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
HOXA1P49639 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 C18orf15-201ENST00000623680 2534 ntBASIC12.8□□□□□ -0.36
HOXA1P49639 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
HOXA1P49639 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 CRCP-205ENST00000431089 942 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
HOXA1P49639 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 LITAF-211ENST00000572255 516 ntTSL 4 BASIC12.8□□□□□ -0.36
HOXA1P49639 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
HOXA1P49639 AC024267.1-201ENST00000582320 895 ntBASIC12.8□□□□□ -0.36
HOXA1P49639 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 AQP6-205ENST00000618286 829 ntTSL 5 BASIC12.8□□□□□ -0.36
HOXA1P49639 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC12.8□□□□□ -0.36
HOXA1P49639 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.36
HOXA1P49639 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
HOXA1P49639 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 DLX1-201ENST00000341900 2130 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC12.8□□□□□ -0.36
HOXA1P49639 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC12.8□□□□□ -0.36
HOXA1P49639 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC12.8□□□□□ -0.36
HOXA1P49639 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
HOXA1P49639 DPP10-201ENST00000310323 3052 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
HOXA1P49639 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
HOXA1P49639 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC12.79□□□□□ -0.36
HOXA1P49639 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 TKT-202ENST00000423516 2075 ntTSL 2 BASIC12.79□□□□□ -0.36
HOXA1P49639 PARN-202ENST00000420015 2360 ntTSL 2 BASIC12.79□□□□□ -0.36
HOXA1P49639 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC12.79□□□□□ -0.36
HOXA1P49639 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 AC092135.3-201ENST00000624151 1846 ntBASIC12.79□□□□□ -0.36
HOXA1P49639 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC12.79□□□□□ -0.36
HOXA1P49639 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC12.79□□□□□ -0.36
HOXA1P49639 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
HOXA1P49639 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC12.79□□□□□ -0.36
HOXA1P49639 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 GPX1P2-201ENST00000429271 606 ntBASIC12.79□□□□□ -0.36
HOXA1P49639 FAAHP1-202ENST00000446499 1238 ntBASIC12.79□□□□□ -0.36
HOXA1P49639 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC12.79□□□□□ -0.36
HOXA1P49639 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC12.79□□□□□ -0.36
HOXA1P49639 MAL2-202ENST00000531508 892 ntTSL 3 BASIC12.79□□□□□ -0.36
HOXA1P49639 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC12.79□□□□□ -0.36
HOXA1P49639 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC12.79□□□□□ -0.36
HOXA1P49639 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
HOXA1P49639 AP001005.1-201ENST00000571755 1248 ntBASIC12.79□□□□□ -0.36
HOXA1P49639 PAM16-215ENST00000577031 548 ntTSL 4 BASIC12.79□□□□□ -0.36
HOXA1P49639 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
HOXA1P49639 AL031008.1-201ENST00000619963 541 ntBASIC12.79□□□□□ -0.36
HOXA1P49639 AC004877.2-201ENST00000623941 599 ntBASIC12.79□□□□□ -0.36
HOXA1P49639 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC12.79□□□□□ -0.36
HOXA1P49639 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
HOXA1P49639 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC12.79□□□□□ -0.36
HOXA1P49639 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 AC105206.1-202ENST00000314927 2368 ntBASIC12.79□□□□□ -0.36
HOXA1P49639 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
HOXA1P49639 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
HOXA1P49639 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HOXA1P49639 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms