Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.47□□□□□ -0.09
RFX3P48380 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFX3P48380 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.46□□□□□ -0.09
RFX3P48380 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
RFX3P48380 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
RFX3P48380 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
RFX3P48380 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
RFX3P48380 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.46□□□□□ -0.09
RFX3P48380 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.46□□□□□ -0.09
RFX3P48380 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.46□□□□□ -0.09
RFX3P48380 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
RFX3P48380 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.46□□□□□ -0.09
RFX3P48380 RPL13P2-201ENST00000440687 659 ntBASIC14.46□□□□□ -0.09
RFX3P48380 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.46□□□□□ -0.09
RFX3P48380 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 RNA5SP421-201ENST00000516864 134 ntBASIC14.46□□□□□ -0.09
RFX3P48380 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.46□□□□□ -0.09
RFX3P48380 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
RFX3P48380 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.46□□□□□ -0.09
RFX3P48380 AC004840.1-201ENST00000636359 365 ntBASIC14.46□□□□□ -0.09
RFX3P48380 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.46□□□□□ -0.09
RFX3P48380 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
RFX3P48380 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
RFX3P48380 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
RFX3P48380 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
RFX3P48380 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
RFX3P48380 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.46□□□□□ -0.1
RFX3P48380 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.46□□□□□ -0.1
RFX3P48380 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
RFX3P48380 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.46□□□□□ -0.1
RFX3P48380 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.46□□□□□ -0.1
RFX3P48380 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
RFX3P48380 AC131212.3-201ENST00000624087 4219 ntBASIC14.46□□□□□ -0.1
RFX3P48380 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
RFX3P48380 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
RFX3P48380 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
RFX3P48380 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.45□□□□□ -0.1
RFX3P48380 AC148477.4-201ENST00000613430 1793 ntBASIC14.45□□□□□ -0.1
RFX3P48380 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
RFX3P48380 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.45□□□□□ -0.1
RFX3P48380 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.45□□□□□ -0.1
RFX3P48380 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.45□□□□□ -0.1
RFX3P48380 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.45□□□□□ -0.1
RFX3P48380 AL589987.1-201ENST00000453380 819 ntBASIC14.45□□□□□ -0.1
RFX3P48380 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.45□□□□□ -0.1
RFX3P48380 AC084364.1-201ENST00000551967 1556 ntBASIC14.45□□□□□ -0.1
RFX3P48380 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
RFX3P48380 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.45□□□□□ -0.1
RFX3P48380 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.45□□□□□ -0.1
RFX3P48380 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.45□□□□□ -0.1
RFX3P48380 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.45□□□□□ -0.1
RFX3P48380 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
RFX3P48380 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
RFX3P48380 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
RFX3P48380 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
RFX3P48380 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms