Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RBM8B-201ENST00000555532 525 ntBASIC13.35□□□□□ -0.27
COL8A1P27658 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
COL8A1P27658 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC13.35□□□□□ -0.27
COL8A1P27658 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.35□□□□□ -0.27
COL8A1P27658 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC13.35□□□□□ -0.27
COL8A1P27658 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC13.35□□□□□ -0.27
COL8A1P27658 AC007718.1-201ENST00000621078 280 ntBASIC13.35□□□□□ -0.27
COL8A1P27658 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC13.35□□□□□ -0.27
COL8A1P27658 AC004923.1-202ENST00000642106 209 ntBASIC13.35□□□□□ -0.27
COL8A1P27658 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
COL8A1P27658 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.35□□□□□ -0.27
COL8A1P27658 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
COL8A1P27658 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
COL8A1P27658 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
COL8A1P27658 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC13.35□□□□□ -0.27
COL8A1P27658 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.35□□□□□ -0.27
COL8A1P27658 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
COL8A1P27658 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL8A1P27658 AC008741.2-201ENST00000612792 3115 ntBASIC13.35□□□□□ -0.27
COL8A1P27658 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
COL8A1P27658 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
COL8A1P27658 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
COL8A1P27658 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
COL8A1P27658 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
COL8A1P27658 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC13.34□□□□□ -0.27
COL8A1P27658 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
COL8A1P27658 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC13.34□□□□□ -0.27
COL8A1P27658 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
COL8A1P27658 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
COL8A1P27658 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
COL8A1P27658 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 RGS5-214ENST00000429865 754 ntTSL 3 BASIC13.34□□□□□ -0.27
COL8A1P27658 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC13.34□□□□□ -0.27
COL8A1P27658 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC13.34□□□□□ -0.27
COL8A1P27658 AC006335.1-201ENST00000445200 547 ntBASIC13.34□□□□□ -0.27
COL8A1P27658 AC114812.1-204ENST00000449669 728 ntBASIC13.34□□□□□ -0.27
COL8A1P27658 PIN4P1-201ENST00000451079 396 ntBASIC13.34□□□□□ -0.27
COL8A1P27658 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.34□□□□□ -0.27
COL8A1P27658 AL391280.1-201ENST00000506969 1062 ntBASIC13.34□□□□□ -0.27
COL8A1P27658 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
COL8A1P27658 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC13.34□□□□□ -0.27
COL8A1P27658 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC13.34□□□□□ -0.27
COL8A1P27658 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 RNF146-211ENST00000609447 607 ntTSL 4 BASIC13.34□□□□□ -0.27
COL8A1P27658 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC13.34□□□□□ -0.27
COL8A1P27658 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC13.34□□□□□ -0.27
COL8A1P27658 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.34□□□□□ -0.27
COL8A1P27658 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 AC018892.3-201ENST00000623986 2499 ntBASIC13.34□□□□□ -0.27
COL8A1P27658 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC13.34□□□□□ -0.27
COL8A1P27658 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC13.34□□□□□ -0.27
COL8A1P27658 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC13.34□□□□□ -0.27
COL8A1P27658 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL8A1P27658 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
COL8A1P27658 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC13.33□□□□□ -0.27
COL8A1P27658 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
COL8A1P27658 AC004899.1-201ENST00000424687 1714 ntBASIC13.33□□□□□ -0.27
COL8A1P27658 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC13.33□□□□□ -0.27
COL8A1P27658 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
COL8A1P27658 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
COL8A1P27658 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
COL8A1P27658 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
COL8A1P27658 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC13.33□□□□□ -0.28
COL8A1P27658 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
COL8A1P27658 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC13.33□□□□□ -0.28
COL8A1P27658 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL8A1P27658 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.33□□□□□ -0.28
COL8A1P27658 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC13.33□□□□□ -0.28
COL8A1P27658 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL8A1P27658 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL8A1P27658 AL365209.1-201ENST00000624418 6473 ntBASIC13.33□□□□□ -0.28
COL8A1P27658 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
COL8A1P27658 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms