Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.33□□□□□ -0.12
COL5A1P20908 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
COL5A1P20908 SOD2-202ENST00000367054 815 ntTSL 2 BASIC14.33□□□□□ -0.12
COL5A1P20908 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
COL5A1P20908 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL5A1P20908 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC14.33□□□□□ -0.12
COL5A1P20908 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.33□□□□□ -0.12
COL5A1P20908 NAGK-204ENST00000443872 878 ntTSL 3 BASIC14.33□□□□□ -0.12
COL5A1P20908 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL5A1P20908 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC14.33□□□□□ -0.12
COL5A1P20908 BX088702.1-201ENST00000610784 235 ntBASIC14.33□□□□□ -0.12
COL5A1P20908 AC133540.1-201ENST00000620845 1019 ntBASIC14.33□□□□□ -0.12
COL5A1P20908 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL5A1P20908 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL5A1P20908 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL5A1P20908 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.33□□□□□ -0.12
COL5A1P20908 AC013268.4-201ENST00000637413 2228 ntBASIC14.33□□□□□ -0.12
COL5A1P20908 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL5A1P20908 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.33□□□□□ -0.12
COL5A1P20908 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.33□□□□□ -0.12
COL5A1P20908 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL5A1P20908 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL5A1P20908 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
COL5A1P20908 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.33□□□□□ -0.12
COL5A1P20908 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.33□□□□□ -0.12
COL5A1P20908 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.32□□□□□ -0.12
COL5A1P20908 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.32□□□□□ -0.12
COL5A1P20908 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.32□□□□□ -0.12
COL5A1P20908 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC14.32□□□□□ -0.12
COL5A1P20908 AP000358.1-201ENST00000456260 156 ntBASIC14.32□□□□□ -0.12
COL5A1P20908 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 AP002803.1-201ENST00000528836 498 ntBASIC14.32□□□□□ -0.12
COL5A1P20908 PHBP15-201ENST00000574228 665 ntBASIC14.32□□□□□ -0.12
COL5A1P20908 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC14.32□□□□□ -0.12
COL5A1P20908 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC14.32□□□□□ -0.12
COL5A1P20908 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
COL5A1P20908 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.32□□□□□ -0.12
COL5A1P20908 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.32□□□□□ -0.12
COL5A1P20908 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC14.32□□□□□ -0.12
COL5A1P20908 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
COL5A1P20908 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
COL5A1P20908 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.32□□□□□ -0.12
COL5A1P20908 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 AC018629.1-201ENST00000623381 1736 ntBASIC14.32□□□□□ -0.12
COL5A1P20908 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
COL5A1P20908 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.32□□□□□ -0.12
COL5A1P20908 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC14.32□□□□□ -0.12
COL5A1P20908 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
COL5A1P20908 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL5A1P20908 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
COL5A1P20908 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
COL5A1P20908 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC14.31□□□□□ -0.12
COL5A1P20908 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC14.31□□□□□ -0.12
COL5A1P20908 AC008723.1-201ENST00000506922 207 ntBASIC14.31□□□□□ -0.12
COL5A1P20908 GCOM2-201ENST00000509133 1104 ntBASIC14.31□□□□□ -0.12
COL5A1P20908 SCARNA21-201ENST00000517026 139 ntBASIC14.31□□□□□ -0.12
COL5A1P20908 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC14.31□□□□□ -0.12
COL5A1P20908 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC14.31□□□□□ -0.12
COL5A1P20908 PTK2-225ENST00000520892 571 ntTSL 4 BASIC14.31□□□□□ -0.12
COL5A1P20908 TMCO5B-205ENST00000530020 894 ntBASIC14.31□□□□□ -0.12
COL5A1P20908 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC14.31□□□□□ -0.12
COL5A1P20908 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
COL5A1P20908 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC14.31□□□□□ -0.12
COL5A1P20908 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
COL5A1P20908 AL109837.1-201ENST00000603272 613 ntBASIC14.31□□□□□ -0.12
COL5A1P20908 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.31□□□□□ -0.12
COL5A1P20908 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.31□□□□□ -0.12
COL5A1P20908 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 ZBED1P1-201ENST00000502364 1930 ntBASIC14.31□□□□□ -0.12
COL5A1P20908 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
COL5A1P20908 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL5A1P20908 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.31□□□□□ -0.12
COL5A1P20908 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.31□□□□□ -0.12
COL5A1P20908 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC14.31□□□□□ -0.12
COL5A1P20908 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms