Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 RPL5P21-201ENST00000404620 815 ntBASIC11.25□□□□□ -0.61
SMKR1H3BMG3 RPS8P6-201ENST00000426177 609 ntBASIC11.25□□□□□ -0.61
SMKR1H3BMG3 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 CCDC74BP1-201ENST00000508880 1123 ntBASIC11.25□□□□□ -0.61
SMKR1H3BMG3 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 HNRNPUP1-201ENST00000554987 333 ntBASIC11.25□□□□□ -0.61
SMKR1H3BMG3 AC091304.2-201ENST00000564639 760 ntBASIC11.25□□□□□ -0.61
SMKR1H3BMG3 AC024267.1-201ENST00000582320 895 ntBASIC11.25□□□□□ -0.61
SMKR1H3BMG3 AC097359.3-201ENST00000603982 1210 ntBASIC11.25□□□□□ -0.61
SMKR1H3BMG3 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 AL359881.3-201ENST00000602640 1721 ntBASIC11.25□□□□□ -0.61
SMKR1H3BMG3 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC11.25□□□□□ -0.61
SMKR1H3BMG3 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 AC018442.1-201ENST00000421439 2061 ntBASIC11.24□□□□□ -0.61
SMKR1H3BMG3 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 AL607033.1-201ENST00000623900 1599 ntBASIC11.24□□□□□ -0.61
SMKR1H3BMG3 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 LSS-211ENST00000522411 2523 ntTSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 GALC-206ENST00000544807 2528 ntTSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
SMKR1H3BMG3 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC11.24□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 9.9 ms