Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 AP001063.1-201ENST00000568332 529 ntBASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 AC009486.1-201ENST00000569860 813 ntBASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 AL359881.2-201ENST00000602973 570 ntBASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 AL512343.1-201ENST00000605837 169 ntBASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 AC017083.2-201ENST00000608069 979 ntBASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 AL008721.1-201ENST00000609964 604 ntBASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 MROH4P-201ENST00000431302 1578 ntBASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 AC104457.1-201ENST00000401024 814 ntBASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL4A3BPQ9Y5P4 TPO-203ENST00000346956 2923 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 KRT43P-201ENST00000434019 910 ntBASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 AC234783.1-201ENST00000441761 496 ntBASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 CROCCP4-201ENST00000457096 498 ntBASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 IFT20-206ENST00000578122 834 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 IFT20-208ENST00000578985 831 ntTSL 3 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL4A3BPQ9Y5P4 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms