Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 AC106820.3-201ENST00000561653 397 ntBASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 AC013355.1-201ENST00000562625 723 ntBASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 RN7SL163P-201ENST00000583100 276 ntBASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PCDHGA1Q9Y5H4 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 FTLP10-202ENST00000505798 471 ntBASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 RN7SL574P-201ENST00000581512 297 ntBASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 AC026740.1-201ENST00000607068 791 ntBASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 U62317.3-201ENST00000608319 855 ntBASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PCDHGA1Q9Y5H4 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 HYMAI-201ENST00000635591 3347 ntBASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 AC008132.1-202ENST00000342005 1389 ntBASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 AC091046.1-201ENST00000331871 207 ntBASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 AC006335.1-201ENST00000445200 547 ntBASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 AL596276.2-201ENST00000447525 331 ntBASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 EEF1DP6-201ENST00000449232 372 ntBASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 NUP210P1-202ENST00000504322 710 ntBASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 AP003171.2-201ENST00000528208 925 ntBASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 BNIP3P13-201ENST00000599968 566 ntBASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms